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来自大肠杆菌的全长Hfq的结构分析。

Structural analysis of full-length Hfq from Escherichia coli.

作者信息

Beich-Frandsen Mads, Večerek Branislav, Sjöblom Björn, Bläsi Udo, Djinović-Carugo Kristina

机构信息

Department of Structural and Computational Biology, Max F. Perutz Laboratories, University of Vienna, Campus Vienna Biocenter 5, A-1030 Vienna, Austria.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 May 1;67(Pt 5):536-40. doi: 10.1107/S174430911100786X. Epub 2011 Apr 20.

DOI:10.1107/S174430911100786X
PMID:21543856
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3087635/
Abstract

The structure of full-length host factor Qβ (Hfq) from Escherichia coli obtained from a crystal belonging to space group P1, with unit-cell parameters a = 61.91, b = 62.15, c = 81.26 Å, α = 78.6, β = 86.2, γ = 59.9°, was solved by molecular replacement to a resolution of 2.85 Å and refined to R(work) and R(free) values of 20.7% and 25.0%, respectively. Hfq from E. coli has previously been crystallized and the structure has been solved for the N-terminal 72 amino acids, which cover ~65% of the full-length sequence. Here, the purification, crystallization and structural data of the full 102-amino-acid protein are presented. These data revealed that the presence of the C-terminus changes the crystal packing of E. coli Hfq. The crystal structure is discussed in the context of the recently published solution structure of Hfq from E. coli.

摘要

通过分子置换法解析了来源于大肠杆菌的全长宿主因子Qβ(Hfq)的结构,该晶体属于P1空间群,晶胞参数为a = 61.91、b = 62.15、c = 81.26 Å,α = 78.6°、β = 86.2°、γ = 59.9°,分辨率为2.85 Å,最终的R(work)和R(free)值分别为20.7%和25.0%。此前已获得大肠杆菌Hfq的晶体,并解析了其N端72个氨基酸的结构,该片段覆盖了全长序列的约65%。本文给出了完整的102个氨基酸的蛋白质的纯化、结晶及结构数据。这些数据表明,C端的存在改变了大肠杆菌Hfq的晶体堆积方式。结合最近发表的大肠杆菌Hfq的溶液结构对晶体结构进行了讨论。

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本文引用的文献

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Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq.大肠杆菌 RNA 伴侣 Hfq C 端结构的动态和功能研究。
Nucleic Acids Res. 2011 Jun;39(11):4900-15. doi: 10.1093/nar/gkq1346. Epub 2011 Feb 17.
3
The structures of mutant forms of Hfq from Pseudomonas aeruginosa reveal the importance of the conserved His57 for the protein hexamer organization.铜绿假单胞菌Hfq突变体形式的结构揭示了保守的组氨酸57对蛋白质六聚体组织的重要性。
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Jul 1;66(Pt 7):760-4. doi: 10.1107/S1744309110017331. Epub 2010 Jun 23.
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Expression, crystallization and preliminary crystallographic analysis of RNA-binding protein Hfq (YmaH) from Bacillus subtilis in complex with an RNA aptamer.来自枯草芽孢杆菌的RNA结合蛋白Hfq(YmaH)与RNA适体复合物的表达、结晶及初步晶体学分析
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 May 1;66(Pt 5):563-6. doi: 10.1107/S1744309110009942. Epub 2010 Apr 30.
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