Seattle Aquarium, 1483 Alaskan Way, Pier 59, Seattle, WA 98101-2059, USA, Benaroya Research Institute at Virginia Mason, 1201 Ninth Ave., Seattle, WA 98101-2795, USA.
Mol Ecol Resour. 2009 May;9(3):978-81. doi: 10.1111/j.1755-0998.2009.02531.x. Epub 2009 Feb 5.
Novel sixgill shark (Hexanchus griseus) microsatellite loci were developed and tested on five shark species. A suite of microsatellite loci previously developed for lemon sharks (Negaprion brevirostris) was also tested. Data on 15 microsatellites are presented including primer sequences, number of alleles (a), observed (H(O) ) and expected heterozygosities (H(E) ), and F(IS) values for sixgill sharks (a = 10-69, H(O) = 0.24-1.00, H(E) = 0.76-0.96 and F(IS) = -0.21-0.60), sevengill sharks (Notorynchus cepedianus) (a = 6-40, H(O) = 0.20-0.73, H(E) = 0.59-0.94 and F(IS) = -0.47-0.58), Pacific spiny dogfish (Squalus acanthias) (a = 3-13, H(O) = 0.00-0.96, H(E) = 0.24-0.93 and F(IS) =-0.52-1.00), angle sharks (Squatina californica) (a = 1-4, H(O) = 0.00-1.00, H(E) = 0.60-1.00 and F(IS) =-1.00-0.25), and leopard sharks (Triakis semifasciata) (a = 3-16, H(O) = 0.20-1.00, H(E) = 0.53-0.92 and F(IS) = -0.57-1.00). A final suite of 14 microsatellites (13 developed from sixgill sharks and one from lemon sharks) were found to be polymorphic and conform to Hardy-Weinberg equilibrium within sixgill sharks.
开发并测试了 15 个微卫星标记,包括引物序列、等位基因数(a)、观测杂合度(H(O))、期望杂合度(H(E))和 F(IS)值,结果显示,六鳃鲨(Hexanchus griseus)的 a 值为 10-69,H(O)为 0.24-1.00,H(E)为 0.76-0.96,F(IS)为-0.21-0.60;七鳃鲨(Notorynchus cepedianus)的 a 值为 6-40,H(O)为 0.20-0.73,H(E)为 0.59-0.94,F(IS)为-0.47-0.58;短鳍灰鲭鲨(Squalus acanthias)的 a 值为 3-13,H(O)为 0.00-0.96,H(E)为 0.24-0.93,F(IS)为-0.52-1.00;尖吻鲭鲨(Squatina californica)的 a 值为 1-4,H(O)为 0.00-1.00,H(E)为 0.60-1.00,F(IS)为-1.00-0.25;豹纹鲨(Triakis semifasciata)的 a 值为 3-16,H(O)为 0.20-1.00,H(E)为 0.53-0.92,F(IS)为-0.57-1.00。最后,有 14 个微卫星标记(13 个来自六鳃鲨,1 个来自柠檬鲨)被发现是多态的,并且在六鳃鲨中符合哈迪-温伯格平衡。