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ParkDB:帕金森病基因表达数据库。

ParkDB: a Parkinson's disease gene expression database.

机构信息

UCL, Department of Cancer Biology, University College London, Gower Street, London, UK.

出版信息

Database (Oxford). 2011 May 18;2011:bar007. doi: 10.1093/database/bar007. Print 2011.

DOI:10.1093/database/bar007
PMID:21593080
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3098727/
Abstract

Parkinson's disease (PD) is a common, adult-onset, neuro-degenerative disorder characterized by the degeneration of cardinal motor signs mainly due to the loss of dopaminergic neurons in the substantia nigra. To date, researchers still have limited understanding of the key molecular events that provoke neurodegeneration in this disease. Here, we present ParkDB, the first queryable database dedicated to gene expression in PD. ParkDB contains a complete set of re-analyzed, curated and annotated microarray datasets. This resource enables scientists to identify and compare expression signatures involved in PD and dopaminergic neuron differentiation under different biological conditions and across species. Database URL: http://www2.cancer.ucl.ac.uk/Parkinson_Db2/

摘要

帕金森病(PD)是一种常见的成人发病、神经退行性疾病,其特征是主要由于黑质中多巴胺能神经元的丧失而导致主要运动体征的退化。迄今为止,研究人员对引发这种疾病神经退行性变的关键分子事件仍知之甚少。在这里,我们介绍了 ParkDB,这是第一个专门针对 PD 基因表达的可查询数据库。ParkDB 包含一整套经过重新分析、整理和注释的微阵列数据集。该资源使科学家能够识别和比较不同生物条件和物种下与 PD 和多巴胺能神经元分化相关的表达特征。数据库网址:http://www2.cancer.ucl.ac.uk/Parkinson_Db2/

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0240/3098727/64b0f0323f2c/bar007f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0240/3098727/04c40868321b/bar007f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0240/3098727/accbdf3aa69d/bar007f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0240/3098727/58c5f360f419/bar007f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0240/3098727/64b0f0323f2c/bar007f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0240/3098727/04c40868321b/bar007f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0240/3098727/accbdf3aa69d/bar007f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0240/3098727/58c5f360f419/bar007f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0240/3098727/64b0f0323f2c/bar007f4.jpg

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本文引用的文献

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Parkinson disease-associated DJ-1 is required for the expression of the glial cell line-derived neurotrophic factor receptor RET in human neuroblastoma cells.帕金森病相关蛋白DJ-1是人类神经母细胞瘤细胞中胶质细胞源性神经营养因子受体RET表达所必需的。
J Biol Chem. 2010 Jun 11;285(24):18565-74. doi: 10.1074/jbc.M109.088294. Epub 2010 Apr 15.
2
Unexpected expression of alpha- and beta-globin in mesencephalic dopaminergic neurons and glial cells.α-和β-珠蛋白在中脑多巴胺能神经元和神经胶质细胞中的意外表达。
Proc Natl Acad Sci U S A. 2009 Sep 8;106(36):15454-9. doi: 10.1073/pnas.0813216106. Epub 2009 Aug 26.
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Comparison of gene expression profile in embryonic mesencephalon and neuronal primary cultures.
运用机器学习方法挖掘帕金森病的遗传和转录组数据。
NPJ Parkinsons Dis. 2020 Sep 9;6:24. doi: 10.1038/s41531-020-00127-w. eCollection 2020.
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KGHC: a knowledge graph for hepatocellular carcinoma.KGHC:用于肝细胞癌的知识图谱。
BMC Med Inform Decis Mak. 2020 Jul 9;20(Suppl 3):135. doi: 10.1186/s12911-020-1112-5.
5
Translational Informatics for Parkinson's Disease: from Big Biomedical Data to Small Actionable Alterations.帕金森病的转化信息学:从大型生物医学数据到微小的可操作改变。
Genomics Proteomics Bioinformatics. 2019 Aug;17(4):415-429. doi: 10.1016/j.gpb.2018.10.007. Epub 2019 Nov 28.
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Parkinson Disease from Mendelian Forms to Genetic Susceptibility: New Molecular Insights into the Neurodegeneration Process.从孟德尔形式到遗传易感性的帕金森病:神经退行性过程的新分子见解。
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From gene networks to drugs: systems pharmacology approaches for AUD.从基因网络到药物:用于 AUD 的系统药理学方法。
Psychopharmacology (Berl). 2018 Jun;235(6):1635-1662. doi: 10.1007/s00213-018-4855-2. Epub 2018 Mar 1.
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J Biomed Semantics. 2017 Sep 20;8(Suppl 1):33. doi: 10.1186/s13326-017-0145-x.
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