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工业规模的基因合成。

Industrial scale gene synthesis.

作者信息

Notka Frank, Liss Michael, Wagner Ralf

机构信息

Life Technologies Inc./GeneArt AG, Regensburg, Germany.

出版信息

Methods Enzymol. 2011;498:247-75. doi: 10.1016/B978-0-12-385120-8.00011-5.

Abstract

The most recent developments in the area of deep DNA sequencing and downstream quantitative and functional analysis are rapidly adding a new dimension to understanding biochemical pathways and metabolic interdependencies. These increasing insights pave the way to designing new strategies that address public needs, including environmental applications and therapeutic inventions, or novel cell factories for sustainable and reconcilable energy or chemicals sources. Adding yet another level is building upon nonnaturally occurring networks and pathways. Recent developments in synthetic biology have created economic and reliable options for designing and synthesizing genes, operons, and eventually complete genomes. Meanwhile, high-throughput design and synthesis of extremely comprehensive DNA sequences have evolved into an enabling technology already indispensable in various life science sectors today. Here, we describe the industrial perspective of modern gene synthesis and its relationship with synthetic biology. Gene synthesis contributed significantly to the emergence of synthetic biology by not only providing the genetic material in high quality and quantity but also enabling its assembly, according to engineering design principles, in a standardized format. Synthetic biology on the other hand, added the need for assembling complex circuits and large complexes, thus fostering the development of appropriate methods and expanding the scope of applications. Synthetic biology has also stimulated interdisciplinary collaboration as well as integration of the broader public by addressing socioeconomic, philosophical, ethical, political, and legal opportunities and concerns. The demand-driven technological achievements of gene synthesis and the implemented processes are exemplified by an industrial setting of large-scale gene synthesis, describing production from order to delivery.

摘要

深度DNA测序以及下游定量和功能分析领域的最新进展正在迅速为理解生化途径和代谢相互依赖性增添新的维度。这些日益深入的见解为设计满足公共需求的新策略铺平了道路,这些需求包括环境应用和治疗发明,或用于可持续和可协调能源或化学品来源的新型细胞工厂。另一个层面是建立在非天然存在的网络和途径之上。合成生物学的最新进展为设计和合成基因、操纵子乃至完整基因组创造了经济且可靠的选择。与此同时,超全面DNA序列的高通量设计和合成已发展成为一种如今在各个生命科学领域都不可或缺的使能技术。在此,我们描述现代基因合成的产业视角及其与合成生物学的关系。基因合成不仅通过高质量、大量地提供遗传物质,还通过按照工程设计原则以标准化形式进行组装,为合成生物学的出现做出了重大贡献。另一方面,合成生物学增加了组装复杂电路和大型复合体的需求,从而推动了适当方法的发展并扩大了应用范围。合成生物学还通过解决社会经济、哲学、伦理、政治和法律方面的机遇与关切,促进了跨学科合作以及更广泛公众的参与。基因合成的需求驱动型技术成就以及实施过程通过大规模基因合成的产业场景得以体现,描述了从订单到交付的生产过程。

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