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胰蛋白酶催化酰化步骤过渡态的从头算研究。

Ab initio study on the transition state of acylation step of trypsin catalysis.

作者信息

Kubodera H, Nakagawa S, Umeyama H

机构信息

Mitsubishi Kasei Corporation, Research Center, Yokohama, Japan.

出版信息

J Pharmacobiodyn. 1990 Mar;13(3):212-23. doi: 10.1248/bpb1978.13.212.

Abstract

The transition state of acylation step of trypsin catalysis was determined by molecular orbital calculations. The calculations were carried out at the RHF-LCAO-SCF approximation level with double zeta basis set (plus polarization functions). The role of His57 residue in the acylation step of the catalytic reaction of trypsin was analysed from a quantum mechanical point of view. The influences of surrounding residues, such as oxyanion hole and Asp102-, and the electrostatic effect of the other regions of the enzyme were also studied. His57 was proved to capture the proton from Ser195 side chain terminus with its lone pair and to transfer it to substrate with electrostatic assistance of Asp102- and oxyanion hole.

摘要

通过分子轨道计算确定了胰蛋白酶催化酰化步骤的过渡态。计算是在具有双ζ基组(加极化函数)的RHF-LCAO-SCF近似水平上进行的。从量子力学角度分析了His57残基在胰蛋白酶催化反应酰化步骤中的作用。还研究了周围残基(如氧阴离子空穴和Asp102-)的影响以及酶其他区域的静电效应。事实证明,His57利用其孤对电子从Ser195侧链末端捕获质子,并在Asp102-和氧阴离子空穴的静电辅助下将其转移至底物。

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