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三氟拉嗪对钙调蛋白与 Fas 结合的调节:一项计算研究。

Trifluoperazine regulation of calmodulin binding to Fas: a computational study.

机构信息

Department of Biomedical Engineering, The University of Alabama at Birmingham, Birmingham, Alabama 35294, USA.

出版信息

Proteins. 2011 Aug;79(8):2543-56. doi: 10.1002/prot.23081. Epub 2011 Jun 7.

Abstract

Death-inducing signaling complex (DISC) formation is a critical step in Fas-mediated signaling for apoptosis. Previous experiments have demonstrated that the calmodulin (CaM) antagonist, trifluoperazine (TFP) regulates CaM-Fas binding and affects Fas-mediated DISC formation. In this study, we investigated the anti-cooperative characteristics of TFP binding to CaM and the effect of TFP on the CaM-Fas interaction from both structural and thermodynamic perspectives using combined molecular dynamics simulations and binding free energy analyses. We studied the interactions of different numbers of TFP molecules with CaM and explored the effects of the resulting conformational changes in CaM on CaM-Fas binding. Results from these analyses showed that the number of TFP molecules bound to CaM directly influenced α-helix formation and hydrogen bond occupancy within the α-helices of CaM, contributing to the conformational and motion changes in CaM. These changes affected CaM binding to Fas, resulting in secondary structural changes in Fas and conformational and motion changes of Fas in CaM-Fas complexes, potentially perturbing the recruitment of Fas-associated death domain for DISC formation. The computational results from this study reveal the structural and molecular mechanisms that underlie the role of the CaM antagonist, TFP, in regulation of CaM-Fas binding and Fas-mediated DISC formation in a concentration-dependent manner.

摘要

死亡诱导信号复合物(DISC)的形成是 Fas 介导的凋亡信号转导的关键步骤。先前的实验已经表明,钙调蛋白(CaM)拮抗剂三氟拉嗪(TFP)调节 CaM-Fas 结合并影响 Fas 介导的 DISC 形成。在这项研究中,我们从结构和热力学角度使用组合分子动力学模拟和结合自由能分析研究了 TFP 与 CaM 的结合的反协同特性以及 TFP 对 CaM-Fas 相互作用的影响。我们研究了不同数量的 TFP 分子与 CaM 的相互作用,并探讨了由此导致的 CaM 构象变化对 CaM-Fas 结合的影响。这些分析的结果表明,与 CaM 结合的 TFP 分子的数量直接影响 CaM 中的α-螺旋形成和α-螺旋内氢键的占据,导致 CaM 的构象和运动变化。这些变化影响 CaM 与 Fas 的结合,导致 Fas 的二级结构发生变化以及 Fas 在 CaM-Fas 复合物中的构象和运动变化,可能会干扰 Fas 相关死亡结构域的募集以形成 DISC。本研究的计算结果揭示了 CaM 拮抗剂 TFP 以浓度依赖的方式调节 CaM-Fas 结合和 Fas 介导的 DISC 形成的结构和分子机制。

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