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卡马西平 DMSO 溶剂化物的结构预测、无序和动力学。

Structure prediction, disorder and dynamics in a DMSO solvate of carbamazepine.

机构信息

The Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge CB2 1EZ, UK.

出版信息

Phys Chem Chem Phys. 2011 Jul 28;13(28):12808-16. doi: 10.1039/c1cp20927b. Epub 2011 Jun 14.

DOI:10.1039/c1cp20927b
PMID:21670828
Abstract

We have applied crystal structure prediction methods to understand and predict the formation of a DMSO solvate of the anti-convulsant drug carbamazepine (CBZ), in which the DMSO molecules are disordered. Crystal structure prediction calculations on the 1:1 CBZ:DMSO solvate revealed the generation of two similar low energy structures which differ only in the orientation of the DMSO molecules. Analysis of crystal energy landscapes generated at 0 K suggests the possibility of solvent disorder. A combined computational and experimental study of the changes in the orientation of the DMSO within the crystal structure revealed that the nature of the disorder changes with temperature. At low temperature, the DMSO disorder is static whilst at high temperature the DMSO configurations can interconvert by a 180° rotation of the DMSO molecules within the lattice. This 180° rotation of the DMSO molecules drives a phase change from a high temperature dynamically disordered phase to a low temperature phase with static disorder. Crystallisation of a DMSO solvate of the related molecule epoxycarbamazepine resulted in a different degree of DMSO disorder in the crystal structure, despite the similarity of the carbamazepine and epoxycarbamazepine molecules. We believe consideration of disorder and its contribution to entropy and crystal free energies at temperature other than 0 K is fundamental for the accuracy of future energy rankings in crystal structure prediction calculations of similar solvated structures.

摘要

我们应用晶体结构预测方法来理解和预测抗惊厥药物卡马西平(CBZ)与二甲基亚砜(DMSO)1:1 溶剂化物的形成,其中 DMSO 分子是无序的。对 1:1 CBZ:DMSO 溶剂化物的晶体结构预测计算揭示了两种类似的低能量结构的生成,它们仅在 DMSO 分子的取向上有所不同。在 0 K 下生成的晶体能量景观分析表明溶剂无序的可能性。对晶体结构中 DMSO 取向变化的计算和实验综合研究表明,无序的性质随温度而变化。在低温下,DMSO 无序是静态的,而在高温下,DMSO 分子在晶格内可以通过 180°旋转来相互转换。这种 DMSO 分子的 180°旋转导致从高温动态无序相到低温静态无序相的相变。相关分子环氧卡马西平的 DMSO 溶剂化物的结晶导致晶体结构中 DMSO 无序程度不同,尽管卡马西平和环氧卡马西平分子相似。我们相信,考虑到无序及其对熵和晶体自由能的贡献,对于在类似溶剂化结构的晶体结构预测计算中未来能量排序的准确性是至关重要的。

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