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新物种凉山预田鼠(啮齿目:仓鼠科)的线粒体全基因组及其与相关物种的系统发育分析:这对预田鼠属的有效性有何启示?

Complete mitochondrial genome of a new vole Proedromys liangshanensis (Rodentia: Cricetidae) and phylogenetic analysis with related species: are there implications for the validity of the genus Proedromys?

作者信息

Hao Haibang, Liu Shaoying, Zhang Xiuyue, Chen Weicai, Song Zhaobin, Peng Hongyuan, Liu Yang, Yue Bisong

机构信息

Sichuan Key Laboratory of Conservation Biology on Endangered Wildlife, College of Life Sciences, Sichuan University, Chengdu, People's Republic of China.

出版信息

Mitochondrial DNA. 2011 Feb;22(1-2):28-34. doi: 10.3109/19401736.2011.588220. Epub 2011 Jun 27.

Abstract

AIM. The complete mitochondrial genome sequence of a newly discovered vole, Proedromys liangshanensis (Rodentia: Cricetidae: Arvicolinae), was determined. RESULTS. The mitogenome of P. liangshanensis is 16,296 bp in length. As with most other mammals, it contains the same gene order and an identical number of genes or regions, including 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, and one putative control region. The A+T content of the control region is 58.2%, the lowest proportion detected so far in Myomorpha. To confirm the phylogenetic position of P. liangshanensis, we carried out phylogenetic analyses based on complete mitochondrial genomic data using Bayesian, maximum parsimony, and maximum likelihood methods. CONCLUSION. All results revealed that P. liangshanenis is sister to Microtus. Although the results do not bear light on the validity of the genus Proedromys, based on the morphological characters, we suggest that Proedromys is an independent genus of equal rank to the genus Microtus.

摘要

目的。测定新发现的一种田鼠——凉山预田鼠(啮齿目:仓鼠科:田鼠亚科)的完整线粒体基因组序列。结果。凉山预田鼠的线粒体基因组长度为16296 bp。与大多数其他哺乳动物一样,它具有相同的基因排列顺序和相同数量的基因或区域,包括13个蛋白质编码基因、两个核糖体RNA基因、22个转运RNA基因和一个假定的控制区。控制区的A+T含量为58.2%,是迄今为止在鼠形亚目中检测到的最低比例。为了确定凉山预田鼠的系统发育位置,我们使用贝叶斯法、最大简约法和最大似然法,基于完整的线粒体基因组数据进行了系统发育分析。结论。所有结果表明,凉山预田鼠是田鼠属的姐妹物种。尽管这些结果并未阐明预田鼠属的有效性,但基于形态特征,我们认为预田鼠是一个与田鼠属等级相同的独立属。

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