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寡核苷酸微阵列在遗传性疾病诊断中的应用。

Oligonucleotide microarrays in constitutional genetic diagnosis.

机构信息

Groupe Hospitalier Pitié-Salpêtrière, Assistance Publique-Hôpitaux de Paris, Département de Génétique et Cytogénétique, France.

出版信息

Expert Rev Mol Diagn. 2011 Jun;11(5):521-32. doi: 10.1586/erm.11.32.

DOI:10.1586/erm.11.32
PMID:21707460
Abstract

Oligonucleotide microarrays such as comparative genomic hybridization arrays and SNP microarrays enable the identification of genomic imbalances - also termed copy-number variants - with increasing resolution. This article will focus on the most significant applications of high-throughput oligonucleotide microarrays, both in genetic diagnosis and research. In genetic diagnosis, the method is becoming a standard tool for investigating patients with unexplained developmental delay/intellectual disability, autism spectrum disorders and/or with multiple congenital anomalies. Oligonucleotide microarray have also been recently applied to the detection of genomic imbalances in prenatal diagnosis either to characterize a chromosomal rearrangement that has previously been identified by standard prenatal karyotyping or to detect a cryptic genomic imbalance in a fetus with ultrasound abnormalities and a normal standard prenatal karyotype. In research, oligonucleotide microarrays have been used for a wide range of applications, such as the identification of new genes responsible for monogenic disorders and the association of a copy-number variant as a predisposing factor to a common disease. Despite its widespread use, the interpretation of results is not always straightforward. We will discuss several unexpected results and ethical issues raised by these new methods.

摘要

寡核苷酸微阵列,如比较基因组杂交微阵列和 SNP 微阵列,能够以越来越高的分辨率识别基因组失衡——也称为拷贝数变异。本文将重点介绍高通量寡核苷酸微阵列在遗传诊断和研究中的最重要应用。在遗传诊断中,该方法已成为研究不明原因发育迟缓/智力障碍、自闭症谱系障碍和/或多发性先天畸形患者的标准工具。寡核苷酸微阵列最近也已应用于产前诊断中的基因组失衡检测,以描述先前通过标准产前核型分析确定的染色体重排,或检测具有超声异常和正常标准产前核型的胎儿中的隐匿性基因组失衡。在研究中,寡核苷酸微阵列已被广泛应用于各种应用,例如鉴定负责单基因疾病的新基因,以及鉴定拷贝数变异是否为常见疾病的易患因素。尽管其应用广泛,但结果的解释并不总是那么直接。我们将讨论这些新方法带来的一些意外结果和伦理问题。

相似文献

1
Oligonucleotide microarrays in constitutional genetic diagnosis.寡核苷酸微阵列在遗传性疾病诊断中的应用。
Expert Rev Mol Diagn. 2011 Jun;11(5):521-32. doi: 10.1586/erm.11.32.
2
Extending the scope of diagnostic chromosome analysis: detection of single gene defects using high-resolution SNP microarrays.扩展诊断染色体分析的范围:使用高分辨率 SNP 微阵列检测单基因缺陷。
Hum Mutat. 2011 Dec;32(12):1500-6. doi: 10.1002/humu.21581. Epub 2011 Sep 19.
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SNP array analysis in constitutional and cancer genome diagnostics--copy number variants, genotyping and quality control.单核苷酸多态性阵列分析在染色体和癌症基因组诊断中的应用——拷贝数变异、基因分型及质量控制
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The clinical utility of molecular karyotyping using high-resolution array-comparative genomic hybridization.利用高分辨率比较基因组杂交的分子核型分析的临床实用性。
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The usefulness of array comparative genomic hybridization in clinical diagnostics of intellectual disability in children.阵列比较基因组杂交技术在儿童智力残疾临床诊断中的应用价值。
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Whole-genome array CGH identifies pathogenic copy number variations in fetuses with major malformations and a normal karyotype.全基因组微阵列比较基因组杂交技术鉴定出具有重大畸形和正常核型的胎儿中的致病性拷贝数变异。
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High-resolution molecular karyotyping in patients with developmental delay and/or multiple congenital anomalies in a clinical setting.在临床环境中对有发育迟缓及/或多发先天畸形的患者进行高分辨率分子细胞遗传学检测。
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[Genomic abnormalities in children with mental retardation and autism: the use of comparative genomic hybridization in situ (HRCGH) and molecular karyotyping with DNA-microchips (array CGH)].[智力发育迟缓与自闭症儿童的基因组异常:原位比较基因组杂交(HRCGH)及DNA芯片分子核型分析(阵列比较基因组杂交)的应用]
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Copy number imbalances detected with a BAC-based array comparative genomic hybridization platform in congenital diaphragmatic hernia fetuses.在先天性膈疝胎儿中使用基于BAC的阵列比较基因组杂交平台检测到的拷贝数失衡。
Genet Mol Res. 2011 Feb 15;10(1):261-7. doi: 10.4238/vol10-1gmr1001.

引用本文的文献

1
The clinical impact of copy number variants in inherited bone marrow failure syndromes.拷贝数变异在遗传性骨髓衰竭综合征中的临床影响。
NPJ Genom Med. 2017 May 10;2. doi: 10.1038/s41525-017-0019-2.
2
Multiplex ligation-dependent probe amplification workflow for the detection of submicroscopic chromosomal abnormalities in patients with developmental delay/intellectual disability.用于检测发育迟缓/智力残疾患者亚微观染色体异常的多重连接依赖探针扩增工作流程。
Mol Cytogenet. 2013 Feb 6;6(1):7. doi: 10.1186/1755-8166-6-7.