Molecular Modeling Group, Indian Institute of Chemical Technology, Tarnaka, Hyderabad 500607, India.
Phys Chem Chem Phys. 2011 Sep 7;13(33):15211-20. doi: 10.1039/c1cp21346f. Epub 2011 Jul 14.
Insights into the formation of hydrogen bonded clusters are of outstanding importance and quantum chemical calculations play a pivotal role in achieving this understanding. Structure and energetic comparison of linear, circular and standard forms of (acetamide)(n) clusters (n = 1-15) at the B3LYP/D95** level of theory including empirical dispersion correction reveals significant cooperativity of hydrogen bonding and size dependent structural preference. A substantial amount of impact of BSSE is observed in these calculations as the cluster size increases irrespective of the kind of arrangement. The interaction energy per monomer increases from dimer to 15mer by 90% in the case of the circular arrangement, by 76% in the case of the linear arrangement and by 34% in the case of the standard arrangement respectively. The cooperativity in hydrogen bonding is also manifested by a regular decrease in average OH and C-N bond distances, while average C=O and N-H bond lengths increase with increasing cluster size. Atoms-In-Molecules (AIM) analysis is used to characterize the nature of hydrogen bonding between the acetamide molecules in the cluster on the basis of electron density (ρ) values obtained at the bond critical point. An analysis of N-H bond stretching frequencies as a function of the cluster size shows a marked red shift as the cluster size increases from 1 to 15.
氢键簇形成的研究具有重要意义,量子化学计算在实现这一理解方面起着关键作用。在 B3LYP/D95**理论水平上,对(乙酰胺)(n)簇(n = 1-15)的线性、圆形和标准形式的结构和能量进行比较,包括经验色散校正,揭示了氢键的显著协同作用和依赖于尺寸的结构偏好。在这些计算中,无论排列方式如何,随着簇尺寸的增加,BSSE 的影响都相当大。在圆形排列的情况下,单体间的相互作用能从二聚体增加到 15 聚体时增加了 90%,在直线排列的情况下增加了 76%,在标准排列的情况下增加了 34%。氢键协同作用也表现为平均 OH 和 C-N 键距离的规则减小,而平均 C=O 和 N-H 键长度随着簇尺寸的增加而增加。原子在分子(AIM)分析用于根据键临界点处获得的电子密度(ρ)值来表征簇中乙酰胺分子之间氢键的性质。随着簇尺寸从 1 增加到 15,N-H 键拉伸频率作为簇尺寸的函数的分析显示出明显的红移。