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肿瘤球体建模的计算挑战。

Computational challenges of tumor spheroid modeling.

作者信息

Chignola Roberto, Fabbro Alessio Del, Farina Marcello, Milotti Edoardo

机构信息

Dipartimento di Biotecnologie, Università di Verona, and INFN - Sezione di Trieste, Strada le Grazie 15-CV1, I-37134 Verona, Italia.

出版信息

J Bioinform Comput Biol. 2011 Aug;9(4):559-77. doi: 10.1142/s0219720011005379.

Abstract

The speed and the versatility of today's computers open up new opportunities to simulate complex biological systems. Here we review a computational approach recently proposed by us to model large tumor cell populations and spheroids, and we put forward general considerations that apply to any fine-grained numerical model of tumors. We discuss ways to bypass computational limitations and discuss our incremental approach, where each step is validated by experimental observations on a quantitative basis. We present a few results on the growth of tumor cells in closed and open environments and of tumor spheroids. This study suggests new ways to explore the initial growth phase of solid tumors and to optimize antitumor treatments.

摘要

当今计算机的速度和多功能性为模拟复杂生物系统带来了新机遇。在此,我们回顾了我们最近提出的一种用于对大型肿瘤细胞群体和球体进行建模的计算方法,并提出了适用于任何肿瘤细粒度数值模型的一般考量。我们讨论了绕过计算限制的方法,并探讨了我们的渐进式方法,其中每一步都通过定量实验观察进行验证。我们展示了一些关于肿瘤细胞在封闭和开放环境以及肿瘤球体中生长的结果。这项研究为探索实体瘤的初始生长阶段和优化抗肿瘤治疗提出了新方法。

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