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1
The regulatory subunit of Escherichia coli aspartate carbamoyltransferase may influence homotropic cooperativity and heterotropic interactions by a direct interaction with the loop containing residues 230-245 of the catalytic chain.大肠杆菌天冬氨酸氨甲酰基转移酶的调节亚基可能通过与催化链中包含230 - 245位残基的环直接相互作用,来影响同促协同效应和异促相互作用。
Proc Natl Acad Sci U S A. 1990 Mar;87(6):2309-13. doi: 10.1073/pnas.87.6.2309.
2
Three of the six possible intersubunit stabilizing interactions involving Glu-239 are sufficient for restoration of the homotropic and heterotropic properties of Escherichia coli aspartate transcarbamoylase.涉及谷氨酸-239的六种可能的亚基间稳定相互作用中的三种,足以恢复大肠杆菌天冬氨酸转氨甲酰酶的同促和异促特性。
J Biol Chem. 2000 Jan 14;275(2):752-8. doi: 10.1074/jbc.275.2.752.
3
A loop involving catalytic chain residues 230-245 is essential for the stabilization of both allosteric forms of Escherichia coli aspartate transcarbamylase.一个涉及催化链残基230 - 245的环对于大肠杆菌天冬氨酸转氨甲酰酶两种别构形式的稳定至关重要。
Biochemistry. 1989 Feb 21;28(4):1617-26. doi: 10.1021/bi00430a029.
4
240s loop interactions stabilize the T state of Escherichia coli aspartate transcarbamoylase.240秒的循环相互作用稳定了大肠杆菌天冬氨酸转氨甲酰酶的T状态。
J Biol Chem. 2004 May 28;279(22):23302-10. doi: 10.1074/jbc.M401637200. Epub 2004 Mar 10.
5
Importance of a conserved residue, aspartate-162, for the function of Escherichia coli aspartate transcarbamoylase.保守残基天冬氨酸-162对大肠杆菌天冬氨酸转氨甲酰酶功能的重要性。
Biochemistry. 1992 Mar 24;31(11):3026-32. doi: 10.1021/bi00126a026.
6
Threonine 82 in the regulatory chain is important for nucleotide affinity and for the allosteric stabilization of Escherichia coli aspartate transcarbamoylase.调节链中的苏氨酸82对于核苷酸亲和力以及大肠杆菌天冬氨酸转氨甲酰酶的变构稳定很重要。
Biochim Biophys Acta. 1998 Dec 8;1429(1):249-58. doi: 10.1016/s0167-4838(98)00234-9.
7
Arginine 54 in the active site of Escherichia coli aspartate transcarbamoylase is critical for catalysis: a site-specific mutagenesis, NMR, and X-ray crystallographic study.大肠杆菌天冬氨酸转氨甲酰酶活性位点中的精氨酸54对催化作用至关重要:一项定点诱变、核磁共振和X射线晶体学研究。
Protein Sci. 1992 Nov;1(11):1435-46. doi: 10.1002/pro.5560011105.
8
Importance of the loop at residues 230-245 in the allosteric interactions of Escherichia coli aspartate carbamoyltransferase.大肠杆菌天冬氨酸氨甲酰基转移酶变构相互作用中230-245位残基处环的重要性。
Proc Natl Acad Sci U S A. 1986 Aug;83(16):5866-70. doi: 10.1073/pnas.83.16.5866.
9
The importance of the link between Glu204 of the catalytic chain and Arg130 of the regulatory chain for the homotropic and heterotropic properties of Escherichia coli aspartate transcarbamoylase.催化链的Glu204与调节链的Arg130之间的联系对大肠杆菌天冬氨酸转氨甲酰酶的同促和异促性质的重要性。
J Biol Chem. 1989 Sep 5;264(25):14860-4.
10
The conserved residues glutamate-37, aspartate-100, and arginine-269 are important for the structural stabilization of Escherichia coli aspartate transcarbamoylase.保守残基谷氨酸-37、天冬氨酸-100和精氨酸-269对大肠杆菌天冬氨酸转氨甲酰酶的结构稳定很重要。
Biochemistry. 1993 Sep 28;32(38):10150-8. doi: 10.1021/bi00089a034.

引用本文的文献

1
X-ray Scattering Studies of Protein Structural Dynamics.蛋白质结构动力学的X射线散射研究。
Chem Rev. 2017 Jun 28;117(12):7615-7672. doi: 10.1021/acs.chemrev.6b00790. Epub 2017 May 30.
2
Allostery and cooperativity in Escherichia coli aspartate transcarbamoylase.大肠杆菌天冬氨酸转氨甲酰酶的变构和协同作用。
Arch Biochem Biophys. 2012 Mar 15;519(2):81-90. doi: 10.1016/j.abb.2011.10.024. Epub 2011 Dec 16.
3
An allosteric circuit in caspase-1.半胱天冬酶-1中的变构回路。
J Mol Biol. 2008 Sep 19;381(5):1157-67. doi: 10.1016/j.jmb.2008.06.040. Epub 2008 Jun 20.
4
Structural model of the R state of Escherichia coli aspartate transcarbamoylase with substrates bound.
J Mol Biol. 2007 Aug 31;371(5):1261-73. doi: 10.1016/j.jmb.2007.06.011. Epub 2007 Jun 9.
5
Direct observation in solution of a preexisting structural equilibrium for a mutant of the allosteric aspartate transcarbamoylase.对别构天冬氨酸转氨甲酰酶突变体预先存在的结构平衡在溶液中的直接观察。
Proc Natl Acad Sci U S A. 2007 Jan 9;104(2):495-500. doi: 10.1073/pnas.0607641104. Epub 2007 Jan 3.
6
Allosteric regulation of catalytic activity: Escherichia coli aspartate transcarbamoylase versus yeast chorismate mutase.催化活性的变构调节:大肠杆菌天冬氨酸转氨甲酰酶与酵母分支酸变位酶的比较
Microbiol Mol Biol Rev. 2001 Sep;65(3):404-21, table of contents. doi: 10.1128/MMBR.65.3.404-421.2001.
7
Heterotropic interactions in aspartate transcarbamoylase: turning allosteric ATP activation into inhibition as a consequence of a single tyrosine to phenylalanine mutation.天冬氨酸转氨甲酰酶中的异向相互作用:由于单个酪氨酸突变为苯丙氨酸,变构ATP激活转变为抑制作用。
Proc Natl Acad Sci U S A. 1991 Oct 15;88(20):9180-3. doi: 10.1073/pnas.88.20.9180.

本文引用的文献

1
The enzymology of control by feedback inhibition.反馈抑制控制的酶学
J Biol Chem. 1962 Mar;237:891-6.
2
An improved colorimetric assay for aspartate and ornithine transcarbamylases.一种用于天冬氨酸转氨甲酰酶和鸟氨酸转氨甲酰酶的改良比色测定法。
Anal Biochem. 1981 Dec;118(2):358-63. doi: 10.1016/0003-2697(81)90594-7.
3
Oligonucleotide-directed mutagenesis using M13-derived vectors: an efficient and general procedure for the production of point mutations in any fragment of DNA.使用M13衍生载体的寡核苷酸定向诱变:在任何DNA片段中产生点突变的高效通用方法。
Nucleic Acids Res. 1982 Oct 25;10(20):6487-500. doi: 10.1093/nar/10.20.6487.
4
Crystal and molecular structures of native and CTP-liganded aspartate carbamoyltransferase from Escherichia coli.来自大肠杆菌的天然及CTP配体结合的天冬氨酸氨甲酰基转移酶的晶体结构和分子结构
J Mol Biol. 1982 Sep 15;160(2):219-63. doi: 10.1016/0022-2836(82)90175-9.
5
Analysis of two purified mutants of Escherichia coli aspartate transcarbamylase with single amino acid substitutions.
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6
Attenuation control of pyrBI operon expression in Escherichia coli K-12.大肠杆菌K-12中pyrBI操纵子表达的衰减控制
Proc Natl Acad Sci U S A. 1983 Jan;80(2):368-72. doi: 10.1073/pnas.80.2.368.
7
Synthesis of aspartate transcarbamoylase in Escherichia coli: transcriptional regulation of the pyrB-pyrI operon.大肠杆菌中天冬氨酸转氨甲酰酶的合成:pyrB-pyrI操纵子的转录调控
Proc Natl Acad Sci U S A. 1983 Mar;80(5):1207-11. doi: 10.1073/pnas.80.5.1207.
8
The organization and regulation of the pyrBI operon in E. coli includes a rho-independent attenuator sequence.大肠杆菌中pyrBI操纵子的组织与调控包括一个不依赖ρ因子的衰减子序列。
Mol Gen Genet. 1982;187(3):391-400. doi: 10.1007/BF00332617.
9
Aspartate transcarbamylase. Interaction with the transition state analogue N-(phosphonacetyl)-L-aspartate.天冬氨酸转氨甲酰酶。与过渡态类似物N-(膦酰乙酰基)-L-天冬氨酸的相互作用。
J Biol Chem. 1971 Nov;246(21):6599-605.
10
Aspartate transcarbamylase. Kinetic studies of the catalytic subunit.天冬氨酸转氨甲酰酶。催化亚基的动力学研究。
J Biol Chem. 1969 Apr 10;244(7):1846-59.

大肠杆菌天冬氨酸氨甲酰基转移酶的调节亚基可能通过与催化链中包含230 - 245位残基的环直接相互作用,来影响同促协同效应和异促相互作用。

The regulatory subunit of Escherichia coli aspartate carbamoyltransferase may influence homotropic cooperativity and heterotropic interactions by a direct interaction with the loop containing residues 230-245 of the catalytic chain.

作者信息

Newton C J, Kantrowitz E R

机构信息

Department of Chemistry, Boston College, Chestnut Hill, MA 02167.

出版信息

Proc Natl Acad Sci U S A. 1990 Mar;87(6):2309-13. doi: 10.1073/pnas.87.6.2309.

DOI:10.1073/pnas.87.6.2309
PMID:2179954
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC53676/
Abstract

A recent x-ray structure of aspartate carbamoyltransferase (carbamoyl-phosphate: L-aspartate carbamoyl-transferase, EC 2.1.3.2) with phosphonoacetamide bound [Gouaux, J. E. & Lipscomb, W. N. (1990) Biochemistry 29, 389-402] shows an interaction between Asp-236 of the catalytic chain and Lys-143 of the regulatory chain. Asp-236 is part of the loop containing residues 230-245 (240s) of the catalytic chain that undergoes a significant conformational change between the tight and the relaxed states of the enzyme. Furthermore, side-chain interactions between the 240s loop and other portions of the enzyme have been shown to be important for the low activity and low affinity of the tight state and the high activity and high affinity of the relaxed state. To determine whether the intersubunit link between Lys-143 of the regulatory chain and Asp-236 of the catalytic chain is important for either homotropic cooperativity and/or the heterotropic interactions in aspartate carbamoyltransferase, site-specific mutagenesis was used to replace Asp-236 with alanine. The mutant enzyme exhibits full activity and a loss of both homotropic cooperativity and heterotropic interactions. Furthermore, the aspartate concentration at half the maximal observed specific activity is reduced by approximately 8-fold. The mutant enzyme exhibits normal thermal stability but drastically altered reactivity toward p-hydroxymercuribenzoate. The catalytic subunit of the mutant and wild-type enzymes have very similar properties. These results, in conjunction with previous experiments, suggest that the intersubunit link involving Asp-236 is involved in the stabilization of the 240s loop in its tight-state position and that the regulatory subunits exert their effect on the catalytic subunits by influencing the position of the 240s loop.

摘要

近期对结合了膦酰基乙酰胺的天冬氨酸氨甲酰基转移酶(氨甲酰磷酸:L-天冬氨酸氨甲酰基转移酶,EC 2.1.3.2)的X射线晶体结构研究[古奥克斯,J. E. & 利普斯科姆,W. N.(1990年)《生物化学》29卷,389 - 402页]显示,催化链上的天冬氨酸-236与调节链上的赖氨酸-143之间存在相互作用。天冬氨酸-236是催化链中包含230 - 245位(240s环)残基的环的一部分,该环在酶的紧密态和松弛态之间会发生显著的构象变化。此外,240s环与酶的其他部分之间的侧链相互作用已被证明对于紧密态的低活性和低亲和力以及松弛态的高活性和高亲和力很重要。为了确定调节链上的赖氨酸-143与催化链上的天冬氨酸-236之间的亚基间连接对于天冬氨酸氨甲酰基转移酶的同促协同性和/或异促相互作用是否重要,采用位点特异性诱变将天冬氨酸-236替换为丙氨酸。突变酶表现出完全活性,但同时丧失了同促协同性和异促相互作用。此外,最大观察到的比活性一半时的天冬氨酸浓度降低了约8倍。突变酶表现出正常的热稳定性,但对对羟基汞苯甲酸的反应性发生了显著改变。突变酶和野生型酶的催化亚基具有非常相似的性质。这些结果与先前的实验一起表明,涉及天冬氨酸-236的亚基间连接参与了240s环在其紧密态位置的稳定,并且调节亚基通过影响240s环的位置对催化亚基发挥作用。