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巴马小型猪热应激下外周血单核细胞基因表达研究中内参基因的选择

Selection of reference genes for gene expression studies in PBMC from Bama miniature pig under heat stress.

作者信息

Xiang-Hong Ju, Yan-Hong Yong, Han-Jin Xu, Li-Long An, Ying-Mei Xu, Pei-Rong Jiao, Ming Liao

机构信息

The South China Agricultural University, Key Laboratory of Animal Disease Control and Prevention, Ministry of Agriculture, College of Veterinary Medicine, Guangzhou 510642, China.

出版信息

Vet Immunol Immunopathol. 2011 Nov 15;144(1-2):160-6. doi: 10.1016/j.vetimm.2011.07.004. Epub 2011 Jul 19.

Abstract

Heat stress decreases immune function and increases disease susceptibility in stressed animals, which are important factors for industry and public health. We investigated the molecular mechanisms underlying heat stress by profiling the expression of target genes involved in the cellular response in the blood of Bama miniature pigs (Sus scrofa domestica) over 21 days with the use of quantitative RT-PCR (qRT-PCR). Reliable standards were established for the normalization of qRT-PCR. Six potential reference genes were ranked by their stability using the geNorm and NormFinder programs. Ribosomal protein L4 (RPL4) and TATA-box-binding protein (TBP) ranked as the two most stably expressed genes, except on day 21 when beta-2-microglobulin (B2M) was the most stable. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and ribosomal RNA 18S (18SRNA) were discarded as reference genes due to their unstable expression patterns. When B2M and TBP genes were selected as standards in combination, rather than GAPDH, a significant upregulation in Toll-like receptor 2 (TLR2) expression was observed after 21 consecutive days of heat stress. These findings suggest that selection of an ideal reference gene is a key step in comparison of transcription profiles in Bama miniature pigs.

摘要

热应激会降低应激动物的免疫功能并增加其疾病易感性,这些都是对养殖业和公众健康至关重要的因素。我们通过使用定量逆转录聚合酶链反应(qRT-PCR)对巴马小型猪(Sus scrofa domestica)血液中参与细胞应答的靶基因在21天内的表达进行分析,来研究热应激背后的分子机制。建立了可靠的标准用于qRT-PCR的标准化。使用geNorm和NormFinder程序根据六个潜在参考基因的稳定性对它们进行排名。核糖体蛋白L4(RPL4)和TATA盒结合蛋白(TBP)被列为表达最稳定的两个基因,但在第21天时,β-2-微球蛋白(B2M)是最稳定的。由于甘油醛-3-磷酸脱氢酶(GAPDH)和核糖体RNA 18S(18SRNA)的表达模式不稳定,因此被排除作为参考基因。当选择B2M和TBP基因联合作为标准而非GAPDH时,连续21天热应激后观察到Toll样受体2(TLR2)表达显著上调。这些发现表明,选择理想的参考基因是比较巴马小型猪转录谱的关键步骤。

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