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ACS Chem Biol. 2011 Oct 21;6(10):1036-40. doi: 10.1021/cb200198c. Epub 2011 Aug 12.
2
Pa0148 from Pseudomonas aeruginosa catalyzes the deamination of adenine.铜绿假单胞菌 Pa0148 能够催化腺嘌呤脱氨酶。
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本文引用的文献

1
Pa0148 from Pseudomonas aeruginosa catalyzes the deamination of adenine.铜绿假单胞菌 Pa0148 能够催化腺嘌呤脱氨酶。
Biochemistry. 2011 Aug 2;50(30):6589-97. doi: 10.1021/bi200868u. Epub 2011 Jul 6.
2
Enzymatic deamination of the epigenetic base N-6-methyladenine.酶促脱氨作用对表观遗传碱基 N6-甲基腺嘌呤的影响。
J Am Chem Soc. 2011 Feb 23;133(7):2080-3. doi: 10.1021/ja110157u. Epub 2011 Jan 28.
3
Discovery and structure determination of the orphan enzyme isoxanthopterin deaminase .发现并确定孤儿酶黄嘌呤核苷酸脱氨酶的结构。
Biochemistry. 2010 May 25;49(20):4374-82. doi: 10.1021/bi100252s.
4
Annotation error in public databases: misannotation of molecular function in enzyme superfamilies.公共数据库中的注释错误:酶超家族中分子功能的错误注释。
PLoS Comput Biol. 2009 Dec;5(12):e1000605. doi: 10.1371/journal.pcbi.1000605. Epub 2009 Dec 11.
5
Structural and metabolic specificity of methylthiocoformycin for malarial adenosine deaminases.甲硫基柯福霉素对疟原虫腺苷脱氨酶的结构和代谢特异性
Biochemistry. 2009 Oct 13;48(40):9618-26. doi: 10.1021/bi9012484.
6
Flipping of alkylated DNA damage bridges base and nucleotide excision repair.烷基化DNA损伤的翻转连接碱基切除修复和核苷酸切除修复。
Nature. 2009 Jun 11;459(7248):808-13. doi: 10.1038/nature08076.
7
Using sequence similarity networks for visualization of relationships across diverse protein superfamilies.使用序列相似性网络可视化不同蛋白质超家族之间的关系。
PLoS One. 2009;4(2):e4345. doi: 10.1371/journal.pone.0004345. Epub 2009 Feb 3.
8
An O6-methylguanine-DNA methyltransferase-like protein from Thermus thermophilus interacts with a nucleotide excision repair protein.嗜热栖热菌中的一种O6-甲基鸟嘌呤-DNA甲基转移酶样蛋白与一种核苷酸切除修复蛋白相互作用。
J Biochem. 2008 Aug;144(2):267-77. doi: 10.1093/jb/mvn065. Epub 2008 May 15.
9
Structure-based activity prediction for an enzyme of unknown function.基于结构的未知功能酶活性预测
Nature. 2007 Aug 16;448(7155):775-9. doi: 10.1038/nature05981. Epub 2007 Jul 1.
10
N-Acetyl-D-glucosamine-6-phosphate deacetylase: substrate activation via a single divalent metal ion.N-乙酰-D-葡萄糖胺-6-磷酸脱乙酰酶:通过单个二价金属离子实现底物激活
Biochemistry. 2007 Jul 10;46(27):7942-52. doi: 10.1021/bi700543x. Epub 2007 Jun 13.

细胞分裂素脱氨酶的发现。

Discovery of a cytokinin deaminase.

出版信息

ACS Chem Biol. 2011 Oct 21;6(10):1036-40. doi: 10.1021/cb200198c. Epub 2011 Aug 12.

DOI:10.1021/cb200198c
PMID:21823622
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3199332/
Abstract

An enzyme of unknown function within the amidohydrolase superfamily was discovered to catalyze the hydrolysis of N-6-substituted adenine derivatives, several of which are cytokinins. Cytokinins are a common type of plant hormone and N-6-substituted adenines are also found as modifications to tRNA. Patl2390, from Pseudoalteromonas atlantica T6c, was shown to hydrolytically deaminate N-6-isopentenyladenine to hypoxanthine and isopentenylamine with a k(cat)/K(m) of 1.2 × 10(7) M(-1) s(-1). Additional substrates include N-6-benzyl adenine, cis- and trans-zeatin, kinetin, O-6-methylguanine, N-6-butyladenine, N-6-methyladenine, N,N-dimethyladenine, 6-methoxypurine, 6-chloropurine, and 6-thiomethylpurine. This enzyme does not catalyze the deamination of adenine or adenosine. A comparative model of Patl2390 was computed using the three-dimensional crystal structure of Pa0148 (PDB code 3PAO ) as a structural template, and docking was used to refine the model to accommodate experimentally identified substrates. This is the first identification of an enzyme that will hydrolyze an N-6-substituted side chain larger than methylamine from adenine.

摘要

一种未知功能的酶,属于酰胺水解酶超家族,被发现能够催化 N-6-取代腺嘌呤衍生物的水解,其中有几种是细胞分裂素。细胞分裂素是一种常见的植物激素,而 N-6-取代的腺嘌呤也被发现是 tRNA 的修饰。来自假交替单胞菌 T6c 的 Patl2390 被证明能够水解 N-6-异戊烯基腺嘌呤,生成次黄嘌呤和异戊烯胺,其 k(cat)/K(m)为 1.2×10(7)M(-1)s(-1)。其他底物包括 N-6-苄基腺嘌呤、顺式和反式玉米素、激动素、O-6-甲基鸟嘌呤、N-6-丁基腺嘌呤、N-6-甲基腺嘌呤、N,N-二甲基腺嘌呤、6-甲氧基嘌呤、6-氯嘌呤和 6-硫甲基嘌呤。该酶不能催化腺嘌呤或腺苷的脱氨作用。使用 Pa0148(PDB 代码 3PAO)的三维晶体结构作为结构模板,计算了 Patl2390 的比较模型,并使用对接来优化模型以适应实验中确定的底物。这是首次鉴定出能够水解腺嘌呤中 N-6-取代侧链大于甲胺的酶。