Departments of Molecular Genetics, Biochemistry and Chemistry, The University of Toronto, Toronto, Ontario, Canada M5S 1A8.
J Mol Biol. 2011 Oct 21;413(2):310-20. doi: 10.1016/j.jmb.2011.07.017. Epub 2011 Aug 3.
The majority of proteins exist in vivo within macromolecular assemblies whose functions are dependent on dynamical processes spanning a wide range of time scales. One such assembly is formed by the molecular chaperone αB-crystallin that exists in a variety of exchanging oligomeric states, centred on a mass of approximately 560 kDa. For many macromolecular assemblies, including αB-crystallin, the inherent dynamics, heterogeneity and high mass contribute to difficulties in quantitative studies. Here, we demonstrate a strategy based on correlating solution-state nuclear magnetic resonance spectroscopy and mass spectrometry data to characterize simultaneously the organization and dynamics of the polydisperse αB-crystallin ensemble. We show that protomeric dimers assemble into oligomers via the binding of extended C-termini, with each monomer donating and receiving one terminus. Moreover, we establish that the C-termini undergo millisecond fluctuations that regulate the interconversion of oligomeric forms. The combined biophysical approach allows construction of an energy profile for a single monomer that completely describes the equilibrium dynamics of the ensemble. It also facilitates an analysis of dynamics spanning the millisecond to hour time scales and secondary to quaternary structural levels, and provides an approach for, obtaining simultaneously detailed structural, thermodynamic and kinetic information on a heterogeneous protein assembly.
大多数蛋白质存在于生物体内的大分子组装体中,其功能依赖于跨越广泛时间尺度的动态过程。其中一种组装体是由分子伴侣αB-晶体蛋白形成的,它存在于多种交换的寡聚态中,以大约 560 kDa 的质量为中心。对于许多大分子组装体,包括 αB-晶体蛋白,其固有动力学、异质性和高质量导致定量研究困难。在这里,我们展示了一种基于关联溶液态核磁共振波谱和质谱数据的策略,以同时表征多分散性αB-晶体蛋白组装体的组织和动力学。我们表明,原聚体二聚体通过扩展的 C 末端的结合组装成寡聚体,每个单体提供和接收一个末端。此外,我们确定 C 末端经历毫秒级波动,调节寡聚形式的相互转换。这种组合的生物物理方法允许构建单个单体的能量曲线,该曲线完全描述了组装体的平衡动力学。它还便于分析跨越毫秒到小时时间尺度的动力学以及二级到四级结构水平,并提供了一种同时获得不均匀蛋白质组装体的详细结构、热力学和动力学信息的方法。