Modeling & Simulation Lab Department of Studies on Structures, University Roma Tre, Roma, Italy.
PLoS One. 2011;6(8):e23187. doi: 10.1371/journal.pone.0023187. Epub 2011 Aug 17.
Bacteria express beta-lactamases to counteract the beneficial action of antibiotics. Benzo[b]-thiophene-2-boronic acid (BZB) derivatives are β-lactamase inhibitors and, as such, promising compounds to be associated with β-lactam antibacterial therapies. The uncharged form of BZB, in particular, is suggested to diffuse through the outer membrane of gram negative bacteria. In this study, through the combination of electrophysiological experiments across reconstituted PC/n-decane bilayers and metadynamics-based free energy calculations, we investigate the permeation mechanism of boronic compounds. Our experimental data establish that BZB passes through the membrane, while computer simulations provide hints for the existence of an aqueous, water-filled monomolecular channel. These findings provide new perspectives for the design of boronic acid derivatives with high membrane permeability.
细菌表达β-内酰胺酶以抵抗抗生素的有益作用。苯并[b]噻吩-2-硼酸(BZB)衍生物是β-内酰胺酶抑制剂,因此是与β-内酰胺类抗菌治疗联合应用的有前途的化合物。特别是 BZB 的不带电形式,据推测可扩散穿过革兰氏阴性菌的外膜。在这项研究中,我们通过在重建的 PC/n-癸烷双层膜上进行的电生理实验和基于元动力学的自由能计算的组合,研究了硼酸化合物的渗透机制。我们的实验数据表明 BZB 通过了膜,而计算机模拟则为存在含水、充满水的单分子通道提供了线索。这些发现为设计具有高膜透过性的硼酸衍生物提供了新的视角。