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对结构多样的α-葡萄糖苷酶抑制剂进行结构分析,以进行活性位点特征分析。

Structural analysis of structurally diverse α-glucosidase inhibitors for active site feature analysis.

机构信息

REQUIMTE, Departamento de Química e Bioquímica, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre, Porto, Portugal.

出版信息

J Enzyme Inhib Med Chem. 2012 Oct;27(5):649-57. doi: 10.3109/14756366.2011.605359. Epub 2011 Sep 8.

Abstract

In the present investigation, a QSAR analysis on structurally diverse α-glucosidase inhibitors (andrographolide, chromenone, triazole derivatives) was performed and the developed models were validated by various validation methods (LMO, LOO, LSO, bootstrapping, Y-randomization and test set). The statistical parameters calculated for the models show that the developed models are statistically significant and have predicted the activities with small residual errors. The crossvalidated correlation coefficient (Q(2)) values obtained from different validation methods show >0.7 for both the models. Other correlations coefficient statistical parameters (R(2)(pred) and R(2)(m)) show that the developed models are reliable and robust. The leave-series-out (LSO) results reveal that the developed models can predict the activity of new compounds and its crossvalidated correlation coefficients' values are comparable with the Q(2) values obtained from other validation methods. The descriptors contributed in the selected models are suggested that the lower/reduced polarizability on the vdW surface area of the molecules and the presence of flexible bonds allow the substituents/side chains in the molecules with free movement and with lesser stretching energy which are favourable for the α-glucosidase inhibitory activity. These results reveal that the developed models are statistically significant and can be used with other molecular modelling works for designing novel α-glucosidase inhibitors with multiple activities (HIV, diabetics, cancer, etc).

摘要

在本研究中,对结构多样的α-葡萄糖苷酶抑制剂(穿心莲内酯、色酮、三唑衍生物)进行了定量构效关系(QSAR)分析,并通过各种验证方法(LMO、LOO、LSO、引导法、Y 随机化和测试集)对开发的模型进行了验证。计算出的模型统计参数表明,所开发的模型在统计学上是显著的,并具有较小残差误差的预测活性。来自不同验证方法的交叉验证相关系数(Q(2))值表明,两个模型的值均>0.7。其他相关系数统计参数(R(2)(pred)和 R(2)(m))表明,所开发的模型是可靠和稳健的。留一法(LSO)的结果表明,所开发的模型可以预测新化合物的活性,其交叉验证相关系数值与其他验证方法获得的 Q(2)值相当。所选模型中贡献的描述符表明,分子的 vdW 表面积上较低/减少的极化率和存在柔性键允许分子中的取代基/侧链具有自由运动和较小拉伸能,这有利于α-葡萄糖苷酶抑制活性。这些结果表明,所开发的模型在统计学上是显著的,并可与其他分子建模工作一起用于设计具有多种活性(HIV、糖尿病、癌症等)的新型α-葡萄糖苷酶抑制剂。

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