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N-Z-N σ(3c-4e) (Z = S, Se, 和 Te) 相互作用的动态和静态行为:基于高分辨率 X 射线衍射测定电子密度的原子在分子中双功能分析,用于 2-(2-吡啶亚氨基)-2H-1,2,4-噻二唑并[2,3-a]吡啶。

Dynamic and static behaviors of N-Z-N σ(3c-4e) (Z = S, Se, and Te) interactions: atoms-in-molecules dual functional analysis with high-resolution X-ray diffraction determination of electron densities for 2-(2-pyridylimino)-2H-1,2,4-thiadiazolo[2,3-a]pyridine.

机构信息

Department of Material Science and Chemistry, Faculty of Systems Engineering, Wakayama University, Wakayama, Japan.

出版信息

J Phys Chem A. 2011 Oct 27;115(42):11775-87. doi: 10.1021/jp2044898. Epub 2011 Sep 30.

DOI:10.1021/jp2044898
PMID:21902277
Abstract

The structure of 2-(2-pyridylimino)-2H-1,2,4-thiadiazolo[2,3-a]pyridine (NSN) indicates that the molecule has a planar geometry with a linear N···S···N linkage, creating a tetracyclic structure of the formal C(2v) symmetry. To clarify the nature of the NSN σ(3c-4e) bonding, together with the related NSeN and NTeN, the dynamic and static behaviors are investigated by applying atoms-in-molecules (AIM) dual functional analysis to both the fully optimized and perturbed structures. The structures were optimized computationally, retaining C(2v) symmetry. All bond critical points are detected as expected and exhibited on both sides of the N···Z···N moiety which supports the formation of NZN σ(3c-4e). It is confirmed that N···S···N is of the covalent nature close to Me(2)S(+)-∗-Cl or Me(2)Se(+)-∗-Br, whereas N···Se···N and N···Te···N have the (regular) CS nature close to the CT adducts of Me(2)S(-∗-Cl)(2) (TBP) and Me(2)Se-∗-Br(2) (MC), respectively. An experimental high-resolution charge density determination has been performed on NSN, which thoroughly supports the theoretical results. Very similar results are obtained in the analogous pyrimidyl derivatives for N···S···N, N···Se···N, and N···Te···N. AIM dual functional analysis, as validated by experimental high-resolution charge densities, is thus confirmed to be an excellent method to elucidate the nature of these interactions.

摘要

2-(2-吡啶亚氨基)-2H-1,2,4-噻二唑[2,3-a]吡啶(NSN)的结构表明,该分子具有平面几何形状,具有线性 N···S···N 键合,形成形式 C(2v)对称的四环结构。为了阐明 NSN σ(3c-4e)键的性质,并结合相关的 NSeN 和 NTeN,通过应用分子中的原子(AIM)双重功能分析来研究其动态和静态行为,对完全优化和受扰结构进行了研究。结构通过计算进行了优化,保留了 C(2v)对称性。所有键临界点都如预期的那样被检测到,并出现在 N···Z···N 部分的两侧,这支持了 NZN σ(3c-4e)的形成。证实了 N···S···N 具有接近 Me(2)S(+)-∗-Cl 或 Me(2)Se(+)-∗-Br 的共价性质,而 N···Se···N 和 N···Te···N 具有类似于 Me(2)S(-∗-Cl)(2)(TBP)和 Me(2)Se-∗-Br(2)(MC)的 CT 加合物的(规则)CS 性质。对 NSN 进行了实验性高分辨率电荷密度测定,这彻底支持了理论结果。在类似的嘧啶衍生物中,对于 N···S···N、N···Se···N 和 N···Te···N,也得到了非常相似的结果。AIM 双重功能分析,如通过实验性高分辨率电荷密度验证,因此被证实是阐明这些相互作用性质的极好方法。

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