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来自布鲁氏菌病病原体——羊种布鲁氏菌的一种与砷酸还原酶相关的蛋白质YffB的溶液结构。

Solution structure of an arsenate reductase-related protein, YffB, from Brucella melitensis, the etiological agent responsible for brucellosis.

作者信息

Buchko Garry W, Hewitt Stephen N, Napuli Alberto J, Van Voorhis Wesley C, Myler Peter J

机构信息

Seattle Structural Genomics Center for Infectious Disease, http://www.ssgcid.org, USA.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Sep 1;67(Pt 9):1129-36. doi: 10.1107/S1744309111006336. Epub 2011 Aug 16.

Abstract

Brucella melitensis is the etiological agent responsible for brucellosis. Present in the B. melitensis genome is a 116-residue protein related to arsenate reductases (Bm-YffB; BR0369). Arsenate reductases (ArsC) convert arsenate ion (H(2)AsO(4)(-)), a compound that is toxic to bacteria, to arsenite ion (AsO(2)(-)), a product that may be efficiently exported out of the cell. Consequently, Bm-YffB is a potential drug target because if arsenate reduction is the protein's major biological function then disabling the cell's ability to reduce arsenate would make these cells more sensitive to the deleterious effects of arsenate. Size-exclusion chromatography and NMR spectroscopy indicate that Bm-YffB is a monomer in solution. The solution structure of Bm-YffB (PDB entry 2kok) shows that the protein consists of two domains: a four-stranded mixed β-sheet flanked by two α-helices on one side and an α-helical bundle. The α/β domain is characteristic of the fold of thioredoxin-like proteins and the overall structure is generally similar to those of known arsenate reductases despite the marginal sequence similarity. Chemical shift perturbation studies with (15)N-labeled Bm-YffB show that the protein binds reduced glutathione at a site adjacent to a region similar to the HX(3)CX(3)R catalytic sequence motif that is important for arsenic detoxification activity in the classical arsenate-reductase family of proteins. The latter observation supports the hypothesis that the ArsC-YffB family of proteins may function as glutathione-dependent thiol reductases. However, comparison of the structure of Bm-YffB with the structures of proteins from the classical ArsC family suggest that the mechanism and possibly the function of Bm-YffB and other related proteins (ArsC-YffB) may differ from those of the ArsC family of proteins.

摘要

羊种布鲁氏菌是引起布鲁氏菌病的病原体。羊种布鲁氏菌基因组中存在一种与砷酸还原酶相关的116个残基的蛋白质(Bm-YffB;BR0369)。砷酸还原酶(ArsC)将对细菌有毒的砷酸根离子(H(2)AsO(4)(-))转化为亚砷酸根离子(AsO(2)(-)),亚砷酸根离子可有效排出细胞。因此,Bm-YffB是一个潜在的药物靶点,因为如果砷酸还原是该蛋白的主要生物学功能,那么使细胞失去还原砷酸的能力会使这些细胞对砷酸的有害作用更敏感。尺寸排阻色谱和核磁共振光谱表明,Bm-YffB在溶液中是单体。Bm-YffB的溶液结构(PDB编号2kok)显示,该蛋白由两个结构域组成:一侧有两条α螺旋的四链混合β折叠片层和一个α螺旋束。α/β结构域是硫氧还蛋白样蛋白折叠的特征,尽管序列相似性较低,但整体结构与已知的砷酸还原酶一般相似。用(15)N标记的Bm-YffB进行的化学位移扰动研究表明,该蛋白在与类似于HX(3)CX(3)R催化序列基序的区域相邻的位点结合还原型谷胱甘肽,该基序对经典砷酸还原酶家族蛋白的砷解毒活性很重要。后一观察结果支持了ArsC-YffB蛋白家族可能作为谷胱甘肽依赖性硫醇还原酶发挥作用的假说。然而,将Bm-YffB的结构与经典ArsC家族蛋白的结构进行比较表明,Bm-YffB和其他相关蛋白(ArsC-YffB)的机制以及可能的功能可能与ArsC家族蛋白不同。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/105a/3169414/fd4cfbdfa7cf/f-67-01129-fig1.jpg

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