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饥饿大肠杆菌群体中的随机切换诱导适应。

Stochastic switching induced adaptation in a starved Escherichia coli population.

机构信息

Graduate School of Information Science and Technology, Osaka University, Suita, Osaka, Japan.

出版信息

PLoS One. 2011;6(9):e23953. doi: 10.1371/journal.pone.0023953. Epub 2011 Sep 13.

Abstract

Population adaptation can be determined by stochastic switching in living cells. To examine how stochastic switching contributes to the fate decision for a population under severe stress, we constructed an Escherichia coli strain crucially dependent on the expression of a rewired gene. The gene essential for tryptophan biosynthesis, trpC, was removed from the native regulatory unit, the Trp operon, and placed under the extraneous control of the lactose utilisation network. Bistability of the network provided the cells two discrete phenotypes: the induced and suppressed level of trpC. The two phenotypes permitted the cells to grow or not, respectively, under conditions of tryptophan depletion. We found that stochastic switching between the two states allowed the initially suppressed cells to form a new population with induced trpC in response to tryptophan starvation. However, the frequency of the transition from suppressed to induced state dropped off dramatically in the starved population, in comparison to that in the nourished population. This reduced switching rate was compensated by increasing the initial population size, which probably provided the cell population more chances to wait for the rarely appearing fit cells from the unfit cells. Taken together, adaptation of a starved bacterial population because of stochasticity in the gene rewired from the ancient regulon was experimentally confirmed, and the nutritional status and the population size played a great role in stochastic adaptation.

摘要

种群适应性可以通过活细胞中的随机转换来决定。为了研究随机转换如何影响处于严重压力下的种群的命运决定,我们构建了一个大肠杆菌菌株,该菌株严重依赖于一个重新布线基因的表达。色氨酸生物合成所必需的基因 trpC 从天然调控单元 Trp 操纵子中去除,并置于乳糖利用网络的外来控制之下。网络的双稳定性为细胞提供了两种离散的表型:诱导型和抑制型 trpC。这两种表型分别允许细胞在色氨酸耗尽的条件下生长或不生长。我们发现,两种状态之间的随机转换允许最初被抑制的细胞在色氨酸饥饿时形成一个新的种群,其中 trpC 被诱导。然而,与营养丰富的种群相比,饥饿种群中从抑制状态到诱导状态的转换频率急剧下降。这种转换率的降低通过增加初始种群大小得到了补偿,这可能为细胞种群提供了更多的机会,从不适宜的细胞中等待罕见出现的适宜细胞。总之,由于从古老调控子中重新布线的基因的随机性,饥饿细菌种群的适应性得到了实验证实,营养状况和种群大小在随机适应中起着重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/651c/3172215/23fa49fff167/pone.0023953.g001.jpg

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