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有效片段势能研究水合作用对葡萄糖振动光谱的影响。

Effective fragment potential study of the influence of hydration on the vibrational spectrum of glucose.

机构信息

Kirchhoff Institute for Physics, University of Heidelberg, Heidelberg, Germany.

出版信息

J Phys Chem A. 2011 Nov 10;115(44):12373-9. doi: 10.1021/jp207225k. Epub 2011 Oct 17.

Abstract

The standard agent glucose has been the subject of numerous experimental and theoretical studies, especially in the aqueous environments which are present in most biochemical processes. The impact of the solvation process on the vibrational spectra of glucose in the mid-infrared region is investigated in this work. The computational study focused both on the variation of the number of surrounding water molecules from 0 to 229 and on the number of single spectra included in the iterative averaging process. The calculations consisted of a combination of force field methods for the sampling of the configuration space and density functional theory for further geometry optimizations. Effective fragment potentials (EFPs) were employed for the description of the solvent as a compromise between accuracy and computational complexity. A correlation between the experimental data and the number of surrounding water molecules could not be observed for an averaging over a small set of computed single spectra. The inclusion of an additionial polarizable continuum model (PCM) also showed no further impact. However, an increase in the number of underlying single spectra in the averaging process increased the correlation between simulations and the experiment substantially. Especially for 18 explicit EFP water molecules, an inclusion of 80 single spectra delivered a Pearson's correlation coefficient r ≈ 0.94.

摘要

标准试剂葡萄糖一直是众多实验和理论研究的主题,特别是在大多数生化过程中存在的水相环境中。本工作研究了溶剂化过程对葡萄糖在中红外区域振动光谱的影响。该计算研究既侧重于周围水分子数量从 0 到 229 的变化,也侧重于迭代平均过程中包含的单个光谱数量。计算包括用于构象空间采样的力场方法和用于进一步几何优化的密度泛函理论的组合。有效片段势(EFPs)被用于描述溶剂,以在准确性和计算复杂性之间取得平衡。对于一小部分计算得到的单光谱的平均处理,无法观察到实验数据与周围水分子数量之间的相关性。另外添加极化连续体模型(PCM)也没有显示出进一步的影响。然而,在平均处理过程中增加基础单光谱的数量大大增加了模拟与实验之间的相关性。特别是对于 18 个显式 EFPs 水分子,包含 80 个单光谱可以得到 Pearson 相关系数 r ≈ 0.94。

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