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残基 179 参与了凝结芽胞杆菌 DF9R 环糊精糖基转移酶的产物特异性。

The residue 179 is involved in product specificity of the Bacillus circulans DF 9R cyclodextrin glycosyltransferase.

机构信息

Departamento de Ciencias Básicas, Universidad Nacional de Luján, Rutas 5 y 7 (6700), Luján, Buenos Aires, Argentina.

出版信息

Appl Microbiol Biotechnol. 2012 Apr;94(1):123-30. doi: 10.1007/s00253-011-3623-6. Epub 2011 Oct 13.

Abstract

Cyclodextrin glycosyltransferases (CGTases) are important enzymes in biotechnology because of their ability to produce cyclodextrin (CD) mixtures from starch whose relative composition depends on enzyme source. A multiple alignment of 46 CGTases and Shannon entropy analysis allowed us to find differences and similarities that could be related to product specificity. Interestingly, position 179 has Gly in all the CGTases except in that from Bacillus circulans DF 9R which possesses Gln. The absence of a side chain at that position has been considered as a strong requirement for substrate binding and cyclization process. Therefore, we constructed two mutants of this enzyme, Q179L and Q179G. The activity and kinetic parameters of Q179G remained unchanged while the Q179L mutant showed a different CDs ratio, a lower catalytic efficiency, and a decreased ability to convert starch into CDs. We show that position 179 is involved in CGTase product specificity and must be occupied by Gly--without a side chain--or by amino acid residues able to interact with the substrate through hydrogen bonds in a way that the cyclization process occurs efficiently. These findings are also explained on the basis of a structural model.

摘要

环糊精糖基转移酶(CGTases)是生物技术中的重要酶,因为它们能够从淀粉中生产环糊精(CD)混合物,其相对组成取决于酶源。对 46 种 CGTases 的多重比对和香农熵分析使我们能够发现可能与产物特异性相关的差异和相似性。有趣的是,除了来自 Bacillus circulans DF 9R 的 CGTase 外,所有的 CGTase 中的第 179 位都为甘氨酸,而后者具有谷氨酰胺。该位置没有侧链被认为是底物结合和环化过程的强烈要求。因此,我们构建了该酶的两个突变体,Q179L 和 Q179G。Q179G 的活性和动力学参数保持不变,而 Q179L 突变体表现出不同的 CD 比例、较低的催化效率和降低的将淀粉转化为 CD 的能力。我们表明,第 179 位参与 CGTase 的产物特异性,必须由甘氨酸(无侧链)或能够通过氢键与底物相互作用的氨基酸残基占据,以便有效地发生环化过程。这些发现也基于结构模型进行了解释。

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