施氏假单胞菌 CGMCC 1.1803 全基因组序列
Complete genome sequence of the type strain Pseudomonas stutzeri CGMCC 1.1803.
机构信息
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Key Laboratory of Crop Biotechnology, Ministry of Agriculture, Beijing 100081, China.
出版信息
J Bacteriol. 2011 Nov;193(21):6095. doi: 10.1128/JB.06061-11.
Abstract
Here we report the complete genome sequence of Pseudomonas stutzeri strain CGMCC 1.1803 (equivalent to ATCC 17588), the type strain of P. stutzeri, which encodes 4,138 open reading frames on a 4,547,930-bp circular chromosome. The CGMCC 1.1803 genome contains genes involved in denitrification, benzoate/catechol degradation, chemotaxis, and other functions.
摘要
我们在此报告施氏假单胞菌（Pseudomonas stutzeri）CGMCC 1.1803 株（相当于 ATCC 17588）的全基因组序列，这是施氏假单胞菌的模式菌株，其 4,547,930-bp 大小的环状染色体上共编码 4,138 个开放阅读框。CGMCC 1.1803 基因组包含参与反硝化、苯甲酸/儿茶酚降解、趋化作用等功能的基因。
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PLoS One. 2008;3(12):e4053. doi: 10.1371/journal.pone.0004053. Epub 2008 Dec 30.
2
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3
Biology of Pseudomonas stutzeri.斯氏假单胞菌生物学
Microbiol Mol Biol Rev. 2006 Jun;70(2):510-47. doi: 10.1128/MMBR.00047-05.
4
Comparative genetic diversity of Pseudomonas stutzeri genomovars, clonal structure, and phylogeny of the species.施氏假单胞菌基因组变种的比较遗传多样性、克隆结构及该物种的系统发育
J Bacteriol. 2004 Aug;186(16):5239-48. doi: 10.1128/JB.186.16.5239-5248.2004.
5
Clonal population structure of Pseudomonas stutzeri, a species with exceptional genetic diversity.斯氏假单胞菌的克隆群体结构，一种具有非凡遗传多样性的物种。
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6
Consed: a graphical tool for sequence finishing.Consed：一种用于序列完成的图形工具。
Genome Res. 1998 Mar;8(3):195-202. doi: 10.1101/gr.8.3.195.
7
The aerobic pseudomonads: a taxonomic study.需氧假单胞菌属：一项分类学研究。
J Gen Microbiol. 1966 May;43(2):159-271. doi: 10.1099/00221287-43-2-159.
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