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通过 2D NMR 鉴定细菌表达的人源和大肠杆菌二氢叶酸还原酶结合的内源性配体。

Identification of endogenous ligands bound to bacterially expressed human and E. coli dihydrofolate reductase by 2D NMR.

机构信息

The Scripps Research Institute, La Jolla, CA 92037, USA.

出版信息

FEBS Lett. 2011 Nov 16;585(22):3528-32. doi: 10.1016/j.febslet.2011.10.014. Epub 2011 Oct 20.

DOI:10.1016/j.febslet.2011.10.014
PMID:22024482
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3215841/
Abstract

Dihydrofolate reductase (DHFR) is a well-studied drug target and a paradigm for understanding enzyme catalysis. Preparation of pure DHFR samples, in defined ligand-bound states, is a prerequisite for in vitro studies and drug discovery efforts. We use NMR spectroscopy to monitor ligand content of human and Escherichia coli DHFR (ecDHFR), which bind different co-purifying ligands during expression in bacteria. An alternate purification strategy yields highly pure DHFR complexes, containing only the desired ligands, in the quantities required for structural studies. Interestingly, ecDHFR is bound to endogenous THF while human DHFR is bound to NADP. Consistent with these findings, a designed "humanized" mutant of ecDHFR switches binding specificity in the cell.

摘要

二氢叶酸还原酶(DHFR)是一个研究得很好的药物靶点,也是理解酶催化的范例。制备纯 DHFR 样品,并使其处于特定配体结合状态,是体外研究和药物发现工作的前提。我们使用 NMR 光谱法监测人源和大肠杆菌源 DHFR(ecDHFR)的配体含量,在细菌中表达时,它们会结合不同的共纯化配体。另一种纯化策略可产生高纯度的 DHFR 复合物,仅含有所需的配体,且数量足以满足结构研究的需要。有趣的是,ecDHFR 与内源性 THF 结合,而人源 DHFR 与 NADP 结合。与这些发现一致的是,ecDHFR 的一种设计“人源化”突变体在细胞中改变了结合特异性。

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本文引用的文献

1
A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis.动态敲除揭示构象波动会影响酶催化的化学步骤。
Science. 2011 Apr 8;332(6026):234-8. doi: 10.1126/science.1198542.
2
Ligands in PSI structures.光合系统I结构中的配体。
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 1;66(Pt 10):1309-16. doi: 10.1107/S1744309110008092. Epub 2010 Jul 6.
3
Dynamic dysfunction in dihydrofolate reductase results from antifolate drug binding: modulation of dynamics within a structural state.二氢叶酸还原酶的动态功能障碍源于抗叶酸药物结合:结构状态内动力学的调节。
Structure. 2009 Mar 11;17(3):386-94. doi: 10.1016/j.str.2009.01.005.
4
Folding trajectories of human dihydrofolate reductase inside the GroEL GroES chaperonin cavity and free in solution.人二氢叶酸还原酶在GroEL GroES伴侣蛋白腔内及溶液中自由状态下的折叠轨迹。
Proc Natl Acad Sci U S A. 2007 Dec 26;104(52):20788-92. doi: 10.1073/pnas.0710042105. Epub 2007 Dec 19.
5
The dynamic energy landscape of dihydrofolate reductase catalysis.二氢叶酸还原酶催化作用的动态能量景观。
Science. 2006 Sep 15;313(5793):1638-42. doi: 10.1126/science.1130258.
6
Direct NMR observation of a substrate protein bound to the chaperonin GroEL.直接核磁共振观察与伴侣蛋白GroEL结合的底物蛋白。
Proc Natl Acad Sci U S A. 2005 Sep 6;102(36):12748-53. doi: 10.1073/pnas.0505642102. Epub 2005 Aug 22.
7
Structure, dynamics, and catalytic function of dihydrofolate reductase.二氢叶酸还原酶的结构、动力学及催化功能
Annu Rev Biophys Biomol Struct. 2004;33:119-40. doi: 10.1146/annurev.biophys.33.110502.133613.
8
Identification of critical amino acid residues on human dihydrofolate reductase protein that mediate RNA recognition.鉴定人二氢叶酸还原酶蛋白上介导RNA识别的关键氨基酸残基。
Nucleic Acids Res. 2002 Oct 15;30(20):4481-8. doi: 10.1093/nar/gkf562.
9
Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: crystallographic evidence.大肠杆菌二氢叶酸还原酶作用机制中的环与亚结构域运动:晶体学证据
Biochemistry. 1997 Jan 21;36(3):586-603. doi: 10.1021/bi962337c.
10
Methotrexate-resistant variants of human dihydrofolate reductase with substitutions of leucine 22. Kinetics, crystallography, and potential as selectable markers.具有亮氨酸22替代的人二氢叶酸还原酶甲氨蝶呤抗性变体。动力学、晶体学及作为选择标记的潜力。
J Biol Chem. 1995 Mar 10;270(10):5057-64. doi: 10.1074/jbc.270.10.5057.