BioMart: driving a paradigm change in biological data management.
作者信息
Kasprzyk Arek
出版信息
Database (Oxford). 2011 Nov 13;2011:bar049. doi: 10.1093/database/bar049. Print 2011.
Abstract
摘要
相似文献
1
BioMart: driving a paradigm change in biological data management.
Database (Oxford). 2011 Nov 13;2011:bar049. doi: 10.1093/database/bar049. Print 2011.
2
mzAPI: a new strategy for efficiently sharing mass spectrometry data.
Nat Methods. 2009 Apr;6(4):240-1. doi: 10.1038/nmeth0409-240.
3
Data integration gets 'Sloppy'.
Nat Biotechnol. 2006 Sep;24(9):1070-1. doi: 10.1038/nbt0906-1070.
4
Seeing data: new methods for understanding information.
IEEE Comput Graph Appl. 2004 May-Jun;24(3):6-12. doi: 10.1109/mcg.2004.1297004.
5
A pitfall of wiki solution for biological databases.
Brief Bioinform. 2009 May;10(3):295-6. doi: 10.1093/bib/bbn053. Epub 2008 Dec 6.
6
BioPortal: ontologies and data resources with the click of a mouse.
AMIA Annu Symp Proc. 2008 Nov 6:1223-4.
7
Medical data on demand with WebMIA.
IEEE Eng Med Biol Mag. 2005 May-Jun;24(3):117-22. doi: 10.1109/memb.2005.1436469.
8
The Medical Cells: for the spread of clinical knowledge management.
AMIA Annu Symp Proc. 2008 Nov 6:1130.
9
YAdumper: extracting and translating large information volumes from relational databases to structured flat files.
Bioinformatics. 2004 Oct 12;20(15):2455-7. doi: 10.1093/bioinformatics/bth243. Epub 2004 Apr 29.
10
Graph visualization techniques for web clustering engines.
IEEE Trans Vis Comput Graph. 2007 Mar-Apr;13(2):294-304. doi: 10.1109/TVCG.2007.40.
引用本文的文献
1
Genetic Modulation of Lifespan: Dynamic Effects, Sex Differences, and Body Weight Trade-offs.
bioRxiv. 2025 Jul 21:2025.04.27.649857. doi: 10.1101/2025.04.27.649857.
2
MitoMAMMAL: a genome scale model of mammalian mitochondria predicts cardiac and BAT metabolism.
Bioinform Adv. 2024 Nov 5;5(1):vbae172. doi: 10.1093/bioadv/vbae172. eCollection 2025.
3
The ATR inhibitor ceralasertib potentiates cancer checkpoint immunotherapy by regulating the tumor microenvironment.
Nat Commun. 2024 Feb 24;15(1):1700. doi: 10.1038/s41467-024-45996-4.
4
Identification of hub genes significantly linked to temporal lobe epilepsy and apoptosis bioinformatics analysis.
Front Mol Neurosci. 2024 Feb 7;17:1300348. doi: 10.3389/fnmol.2024.1300348. eCollection 2024.
5
Pathway2Targets: an open-source pathway-based approach to repurpose therapeutic drugs and prioritize human targets.
PeerJ. 2023 Sep 29;11:e16088. doi: 10.7717/peerj.16088. eCollection 2023.
6
Investigating the Genetic Background of Spastic Syndrome in North American Holstein Cattle Based on Heritability, Genome-Wide Association, and Functional Genomic Analyses.
Genes (Basel). 2023 Jul 20;14(7):1479. doi: 10.3390/genes14071479.
7
Genetic diversity and signatures of selection in four indigenous horse breeds of Iran.
Heredity (Edinb). 2023 Aug;131(2):96-108. doi: 10.1038/s41437-023-00624-7. Epub 2023 Jun 12.
8
Genome-Wide Detection and Analysis of Copy Number Variation in Anhui Indigenous and Western Commercial Pig Breeds Using Porcine 80K SNP BeadChip.
Genes (Basel). 2023 Mar 5;14(3):654. doi: 10.3390/genes14030654.
9
Integrative comparative analysis of avian chromosome evolution by in-silico mapping of the gene ontology of homologous synteny blocks and evolutionary breakpoint regions.
Genetica. 2023 Jun;151(3):167-178. doi: 10.1007/s10709-023-00185-x. Epub 2023 Mar 20.
10
Genome-Wide DNA Methylation Profile Indicates Potential Epigenetic Regulation of Aging in the Rhesus Macaque Thymus.
Int J Mol Sci. 2022 Nov 29;23(23):14984. doi: 10.3390/ijms232314984.
本文引用的文献
1
Critical amino acid residues in proteins: a BioMart integration of Reactome protein annotations with PRIDE mass spectrometry data and COSMIC somatic mutations.
Database (Oxford). 2011 Oct 23;2011:bar047. doi: 10.1093/database/bar047. Print 2011.
2
The Reactome BioMart.
Database (Oxford). 2011 Oct 19;2011:bar031. doi: 10.1093/database/bar031. Print 2011.
3
BioMart Central Portal: an open database network for the biological community.
Database (Oxford). 2011 Sep 18;2011:bar041. doi: 10.1093/database/bar041. Print 2011.
4
BioMart: a data federation framework for large collaborative projects.
Database (Oxford). 2011 Sep 19;2011:bar038. doi: 10.1093/database/bar038. Print 2011.
5
The BioMart interface to the eMouseAtlas gene expression database EMAGE.
Database (Oxford). 2011 Sep 18;2011:bar029. doi: 10.1093/database/bar029. Print 2011.
6
International Cancer Genome Consortium Data Portal--a one-stop shop for cancer genomics data.
Database (Oxford). 2011 Sep 19;2011:bar026. doi: 10.1093/database/bar026. Print 2011.
7
SigReannot-mart: a query environment for expression microarray probe re-annotations.
Database (Oxford). 2011 Sep 18;2011:bar025. doi: 10.1093/database/bar025. Print 2011.
8
Integrative cancer genomics (IntOGen) in Biomart.
Database (Oxford). 2011 Sep 7;2011:bar039. doi: 10.1093/database/bar039. Print 2011.
9
The InterPro BioMart: federated query and web service access to the InterPro Resource.
Database (Oxford). 2011 Jul 23;2011:bar033. doi: 10.1093/database/bar033. Print 2011.
10
Ensembl BioMarts: a hub for data retrieval across taxonomic space.
Database (Oxford). 2011 Jul 23;2011:bar030. doi: 10.1093/database/bar030. Print 2011.
Zotero 插件