The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.
Nucleic Acids Res. 2012 Jan;40(Database issue):D887-94. doi: 10.1093/nar/gkr1061. Epub 2011 Nov 18.
The Mouse Phenome Project was launched a decade ago to complement mouse genome sequencing efforts by promoting new phenotyping initiatives under standardized conditions and collecting the data in a central public database, the Mouse Phenome Database (MPD; http://phenome.jax.org). MPD houses a wealth of strain characteristics data to facilitate the use of the laboratory mouse in translational research for human health and disease, helping alleviate problems involving experimentation in humans that cannot be done practically or ethically. Data sets are voluntarily contributed by researchers from a variety of institutions and settings, or in some cases, retrieved by MPD staff from public sources. MPD maintains a growing collection of standardized reference data that assists investigators in selecting mouse strains for research applications; houses treatment/control data for drug studies and other interventions; offers a standardized platform for discovering genotype-phenotype relationships; and provides tools for hypothesis testing. MPD improvements and updates since our last NAR report are presented, including the addition of new tools and features to facilitate navigation and data mining as well as the acquisition of new data (phenotypic, genotypic and gene expression).
十年前,启动了“小鼠表型计划”,旨在通过在标准化条件下推广新的表型测定计划,来补充小鼠基因组测序工作,并将数据收集到一个中央公共数据库——小鼠表型数据库(MPD;http://phenome.jax.org)。MPD 拥有丰富的品系特征数据,有助于将实验小鼠应用于人类健康和疾病的转化研究,有助于缓解在人类身上进行实际或伦理上无法进行的实验所涉及的问题。数据集由来自各种机构和环境的研究人员自愿提供,或者在某些情况下,由 MPD 工作人员从公共资源中检索。MPD 不断增加标准化参考数据的收集,以帮助研究人员为研究应用选择小鼠品系;存放药物研究和其他干预措施的治疗/对照数据;为发现基因型-表型关系提供标准化平台;并提供假设检验工具。本文介绍了自我们上次 NAR 报告以来 MPD 的改进和更新,包括添加新工具和功能以方便导航和数据挖掘,以及获取新数据(表型、基因型和基因表达)。