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利用焦磷酸测序 cDNA 读长从头组装分析富油小球藻 A 株(BOT-88-2)的转录组。

Transcriptome analysis of an oil-rich race A strain of Botryococcus braunii (BOT-88-2) by de novo assembly of pyrosequencing cDNA reads.

机构信息

Graduate School of Life and Environment Sciences, University of Tsukuba, Tennoudai 1-1-1, Tsukuba, Ibaraki 305-8572, Japan.

出版信息

Bioresour Technol. 2012 Apr;109:282-6. doi: 10.1016/j.biortech.2011.10.033. Epub 2011 Oct 19.

Abstract

To gain genetic information of oil-producing algae Botryococcus braunii, a novel dataset of 185,936 complementary DNA (cDNA) reads was obtained via pyrosequencing for the representative race A strain (strain BOT-88-2) exhibiting high oil productivity. The cDNA reads were assembled to retrieve 29,038 non-redundant sequences and 964 of them were successfully annotated based on similarity to database sequences. The transcriptome data embraced candidate genes for majority of enzymes involved in the biosynthesis of unsaturated very long-chain fatty acids. The transcriptome dataset has been deposited in the GenBank/EMBL/DDBJ database.

摘要

为了获取产油藻类 Botryococcus braunii 的遗传信息,通过焦磷酸测序获得了代表高产油率的 A 种菌株(菌株 BOT-88-2)的 185936 条 cDNA 读长的新型数据集。将 cDNA 读长组装以检索 29038 个非冗余序列,其中 964 个根据与数据库序列的相似性成功注释。转录组数据包含参与不饱和超长链脂肪酸生物合成的大多数酶的候选基因。转录组数据集已存入 GenBank/EMBL/DDBJ 数据库。

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