Bioinformatics Research Centre, Aarhus University, Aarhus, Denmark.
Adv Exp Med Biol. 2012;736:81-94. doi: 10.1007/978-1-4419-7210-1_4.
We study signaling cascades with an arbitrary number of layers of one-site phosphorylation cycles. Such cascades are abundant in nature and integrated parts of many pathways. Based on the Michaelis-Menten model of enzyme kinetics and the law of mass-action, we derive explicit analytic expressions for how the steady state concentrations and the total amounts of substrates, kinase, and phosphatates depend on each other. In particular, we use these to study how the responses (the activated substrates) vary as a function of the available amounts of substrates, kinase, and phosphatases. Our results provide insight into how the cascade response is affected by crosstalk and external regulation.
我们研究了具有任意数量层一站点磷酸化循环的信号级联。这种级联在自然界中很丰富,是许多途径的组成部分。基于酶动力学的米氏-门捷列夫模型和质量作用定律,我们推导出了稳态浓度以及底物、激酶和磷酸酯之间如何相互依赖的显式解析表达式。特别是,我们使用这些来研究级联响应如何随底物、激酶和磷酸酯的可用量而变化。我们的结果提供了对级联响应如何受到串扰和外部调节影响的深入了解。