ClaMS：一种宏基因组序列分类器。
ClaMS: A Classifier for Metagenomic Sequences.
作者信息
Pati Amrita, Heath Lenwood S, Kyrpides Nikos C, Ivanova Natalia
出版信息
Stand Genomic Sci. 2011 Nov 30;5(2):248-53. doi: 10.4056/sigs.2075298. Epub 2011 Nov 28.
ClaMS - "Classifier for Metagenomic Sequences" - is a Java application for binning assembled contigs in metagenomes using user-specified training sets and initial parameters. Since ClaMS trains on sequence composition-based genomic signatures, it is much faster than binning tools that rely on alignments to homologs; ClaMS can bin ~20,000 sequences in 3 minutes on a laptop with a 2.4 GH× Intel Core 2 Duo processor and 2 GB RAM. ClaMS is meant to be a desktop application for biologists and can be run on any machine under any Operating System on which the Java Runtime Environment can be installed.
ClaMS（“宏基因组序列分类器”）是一个用Java编写的应用程序，用于使用用户指定的训练集和初始参数对宏基因组中组装好的重叠群进行分箱。由于ClaMS基于序列组成的基因组特征进行训练，因此它比依赖与同源物比对的分箱工具快得多；在一台配备2.4GHz英特尔酷睿2双核处理器和2GB内存的笔记本电脑上，ClaMS可以在3分钟内对约20000条序列进行分箱。ClaMS旨在成为生物学家的桌面应用程序，可在任何能够安装Java运行时环境的操作系统下的任何机器上运行。
Zotero 插件