Woolley Thomas E, Baker Ruth E, Gaffney Eamonn A, Maini Philip K
Centre for Mathematical Biology, Mathematical Institute, University of Oxford, 24-29 St Giles', Oxford OX1 3LB, United Kingdom.
Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Oct;84(4 Pt 1):041905. doi: 10.1103/PhysRevE.84.041905. Epub 2011 Oct 3.
Numerous mathematical models exploring the emergence of complexity within developmental biology incorporate diffusion as the dominant mechanism of transport. However, self-organizing paradigms can exhibit the biologically undesirable property of extensive sensitivity, as illustrated by the behavior of the French-flag model in response to intrinsic noise and Turing's model when subjected to fluctuations in initial conditions. Domain growth is known to be a stabilizing factor for the latter, though the interaction of intrinsic noise and domain growth is underexplored, even in the simplest of biophysical settings. Previously, we developed analytical Fourier methods and a description of domain growth that allowed us to characterize the effects of deterministic domain growth on stochastically diffusing systems. In this paper we extend our analysis to encompass stochastically growing domains. This form of growth can be used only to link the meso- and macroscopic domains as the "box-splitting" form of growth on the microscopic scale has an ill-defined thermodynamic limit. The extension is achieved by allowing the simulated particles to undergo random walks on a discretized domain, while stochastically controlling the length of each discretized compartment. Due to the dependence of diffusion on the domain discretization, we find that the description of diffusion cannot be uniquely derived. We apply these analytical methods to two justified descriptions, where it is shown that, under certain conditions, diffusion is able to support a consistent inhomogeneous state that is far removed from the deterministic equilibrium, without additional kinetics. Finally, a logistically growing domain is considered. Not only does this show that we can deal with nonmonotonic descriptions of stochastic growth, but it is also seen that diffusion on a stationary domain produces different effects to diffusion on a domain that is stationary "on average."
众多探索发育生物学中复杂性出现的数学模型都将扩散作为主要的传输机制。然而,自组织范式可能会表现出生物学上不良的广泛敏感性特性,如法国国旗模型对内在噪声的响应以及图灵模型在初始条件波动时的行为所示。已知域生长是后者的一个稳定因素,尽管即使在最简单的生物物理环境中,内在噪声与域生长之间的相互作用也未得到充分探索。此前,我们开发了分析傅里叶方法和域生长的描述,这使我们能够表征确定性域生长对随机扩散系统的影响。在本文中,我们将分析扩展到涵盖随机生长的域。这种生长形式仅可用于连接中观和宏观域,因为微观尺度上的“盒分裂”生长形式具有不明确的热力学极限。通过允许模拟粒子在离散域上进行随机游走,同时随机控制每个离散隔室的长度来实现扩展。由于扩散对域离散化的依赖性,我们发现扩散的描述不能唯一推导得出。我们将这些分析方法应用于两种合理的描述,结果表明,在某些条件下,扩散能够支持一种与确定性平衡相差甚远的一致非均匀状态,而无需额外的动力学。最后,考虑了逻辑斯蒂增长的域。这不仅表明我们可以处理随机生长的非单调描述,而且还可以看到在固定域上的扩散与在“平均”固定域上的扩散产生不同的效果。