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SKEPTICISM TOWARDS SANTA ROSALIA, OR WHY ARE THERE SO FEW KINDS OF ANIMALS?对圣罗莎莉亚的质疑,或者说为何动物种类如此之少?
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Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes.三刺鱼基因组中广泛的连锁不平衡和并行适应性趋异。
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What can patterns of differentiation across plant genomes tell us about adaptation and speciation?植物基因组分化模式能告诉我们关于适应和物种形成的什么信息?
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Genome-wide patterns of divergence during speciation: the lake whitefish case study.物种形成过程中的全基因组分歧模式:湖白鲑案例研究。
Philos Trans R Soc Lond B Biol Sci. 2012 Feb 5;367(1587):354-63. doi: 10.1098/rstb.2011.0197.
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Evolution. 2011 Jun;65(6):1800-7. doi: 10.1111/j.1558-5646.2011.01247.x. Epub 2011 Mar 10.
8
The coupling hypothesis: why genome scans may fail to map local adaptation genes.连锁假说:为什么基因组扫描可能无法定位局部适应基因。
Mol Ecol. 2011 May;20(10):2044-72. doi: 10.1111/j.1365-294X.2011.05080.x. Epub 2011 Apr 7.
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Strong and consistent natural selection associated with armour reduction in sticklebacks.强烈而一致的自然选择与刺鱼的甲胄减少有关。
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10
Genetic basis of pearl millet adaptation along an environmental gradient investigated by a combination of genome scan and association mapping.通过基因组扫描和关联作图相结合的方法研究沿环境梯度的珍珠粟适应的遗传基础。
Mol Ecol. 2011 Jan;20(1):80-91. doi: 10.1111/j.1365-294X.2010.04893.x. Epub 2010 Nov 3.

分歧搭便车与基因流生态物种形成过程中基因组隔离的传播。

Divergence hitchhiking and the spread of genomic isolation during ecological speciation-with-gene-flow.

机构信息

Departments of Biology and Entomology, University of Maryland, College Park, MD 20742, USA.

出版信息

Philos Trans R Soc Lond B Biol Sci. 2012 Feb 5;367(1587):451-60. doi: 10.1098/rstb.2011.0260.

DOI:10.1098/rstb.2011.0260
PMID:22201174
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3233719/
Abstract

In allopatric populations, geographical separation simultaneously isolates the entire genome, allowing genetic divergence to accumulate virtually anywhere in the genome. In sympatric populations, however, the strong divergent selection required to overcome migration produces a genetic mosaic of divergent and non-divergent genomic regions. In some recent genome scans, each divergent genomic region has been interpreted as an independent incidence of migration/selection balance, such that the reduction of gene exchange is restricted to a few kilobases around each divergently selected gene. I propose an alternative mechanism, 'divergence hitchhiking' (DH), in which divergent selection can reduce gene exchange for several megabases around a gene under strong divergent selection. Not all genes/markers within a DH region are divergently selected, yet the entire region is protected to some degree from gene exchange, permitting genetic divergence from mechanisms other than divergent selection to accumulate secondarily. After contrasting DH and multilocus migration/selection balance (MM/SB), I outline a model in which genomic isolation at a given genomic location is jointly determined by DH and genome-wide effects of the progressive reduction in realized migration, then illustrate DH using data from several pairs of incipient species in the wild.

摘要

在异域种群中,地理隔离同时隔离了整个基因组,使得遗传分化几乎可以在基因组的任何地方积累。然而,在同域种群中,为了克服迁移而需要的强烈的分歧选择会产生分歧和非分歧基因组区域的遗传镶嵌。在最近的一些基因组扫描中,每个分歧的基因组区域都被解释为迁移/选择平衡的独立事件,使得基因交换的减少仅限于每个分歧选择基因周围的几个千碱基。我提出了一种替代机制,即“分歧搭便车”(DH),在这种机制中,强烈的分歧选择可以减少几个兆碱基范围内的基因交换。DH 区域内并非所有基因/标记都受到分歧选择,但整个区域在某种程度上受到基因交换的保护,从而允许除分歧选择以外的机制积累次要的遗传分化。在对比了 DH 和多基因迁移/选择平衡(MM/SB)之后,我概述了一个模型,其中特定基因组位置的基因组隔离是由 DH 和实现的迁移减少的全基因组效应共同决定的,然后使用来自野生近缘物种的几个对的数据来说明 DH。