Okazaki Nobuo, Adachi Motoyasu, Tamada Taro, Kurihara Kazuo, Ooga Takushi, Kamiya Nobuo, Kuramitsu Seiki, Kuroki Ryota
Quantum Beam Science Directorate, Japan Atomic Energy Agency, 4 Shirakata-Shirane, Tokai, Ibaraki 319-1195, Japan.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Jan 1;68(Pt 1):49-52. doi: 10.1107/S1744309111044551. Epub 2011 Dec 24.
ADP-ribose pyrophosphatase-I from Thermus thermophilus HB8 (TtADPRase-I) prevents the intracellular accumulation of ADP-ribose by hydrolyzing it to AMP and ribose 5'-phosphate. To understand the catalytic mechanism of TtADPRase-I, it is necessary to investigate the role of glutamates and metal ions as well as the coordination of water molecules located at the active site. A macroseeding method was developed in order to obtain a large TtADPRase-I crystal which was suitable for a neutron diffraction study to provide structural information. Neutron and X-ray diffraction experiments were performed at room temperature using the same crystal. The crystal diffracted to 2.1 and 1.5 Å resolution in the neutron and X-ray diffraction experiments, respectively. The crystal belonged to the primitive space group P3(2)21, with unit-cell parameters a = b = 50.7, c = 119 Å.
嗜热栖热菌HB8(TtADPRase-I)的ADP核糖焦磷酸酶-I通过将ADP核糖水解为AMP和5'-磷酸核糖来防止其在细胞内积累。为了解TtADPRase-I的催化机制,有必要研究谷氨酸和金属离子的作用以及位于活性位点的水分子的配位情况。为了获得适合中子衍射研究以提供结构信息的大尺寸TtADPRase-I晶体,开发了一种宏观接种方法。在室温下使用同一晶体进行了中子和X射线衍射实验。在中子和X射线衍射实验中,该晶体分别衍射到2.1 Å和1.5 Å的分辨率。该晶体属于原始空间群P3(2)21,晶胞参数a = b = 50.7,c = 119 Å。