Frontier Research Center for Applied Atomic Sciences, Ibaraki University, 162-1 Shirakata, Tokai, Ibaraki 319-1106, Japan.
J Struct Biol. 2012 Feb;177(2):283-90. doi: 10.1016/j.jsb.2011.12.022. Epub 2012 Jan 11.
Transthyretin (TTR) is a tetrameric protein associated with human amyloidosis. In vitro, the formation of amyloid fibrils by TTR is known to be promoted by low pH. Here we show the neutron structure of TTR, focusing on the hydrogen bonds, protonation states and pH sensitivities. A large crystal was prepared at pD 7.4 for neutron protein crystallography. Neutron diffraction studies were conducted using the IBARAKI Biological Crystal Diffractometer with the time-of-flight method. The neutron structure solved at 2.0Å resolution revealed the protonation states of His88 and the detailed hydrogen-bond network depending on the protonation states of His88. This hydrogen-bond network is composed of Thr75, Trp79, His88, Ser112, Pro113, Thr118-B and four water molecules, and is involved in both monomer-monomer and dimer-dimer interactions, suggesting that the double protonation of His88 by acidification breaks the hydrogen-bond network and causes the destabilization of the TTR tetramer. In addition, the comparison with X-ray structure at pH 4.0 indicated that the protonation occurred to Asp74, His88 and Glu89 at pH 4.0. Our neutron model provides insights into the molecular stability of TTR related to the hydrogen-bond network, the pH sensitivity and the CH···O weak hydrogen bond.
转甲状腺素蛋白(TTR)是一种与人类淀粉样变性相关的四聚体蛋白。体外研究表明,TTR 的淀粉样纤维形成是由低 pH 值促进的。在这里,我们展示了 TTR 的中子结构,重点关注氢键、质子化状态和 pH 敏感性。在 pD 7.4 下制备了一个大晶体,用于中子蛋白晶体学。使用带有飞行时间法的 Ibaraki 生物晶体衍射仪进行了中子衍射研究。在 2.0Å 分辨率下解决的中子结构揭示了 His88 的质子化状态以及详细的氢键网络,这取决于 His88 的质子化状态。这个氢键网络由 Thr75、Trp79、His88、Ser112、Pro113、Thr118-B 和四个水分子组成,涉及单体-单体和二聚体-二聚体相互作用,表明酸化导致 His88 的双重质子化破坏了氢键网络并导致 TTR 四聚体的不稳定。此外,与 pH 4.0 下的 X 射线结构的比较表明,在 pH 4.0 下,Asp74、His88 和 Glu89 发生了质子化。我们的中子模型提供了对 TTR 分子稳定性的深入了解,包括氢键网络、pH 敏感性和 CH···O 弱氢键。