Jackson Laboratory, Bar Harbor, Maine 04609, USA.
Invest Ophthalmol Vis Sci. 2012 Mar 26;53(3):1663-9. doi: 10.1167/iovs.11-8871. Print 2012 Mar.
To identify genes that modify photoreceptor cell loss in the retinas of homozygous Tulp1(tm1Pjn) and Tub(tub) mice, which exhibit juvenile retinitis pigmentosa.
Modifier loci were identified by genetic quantitative trait locus analysis. F2 Tulp1(tm1Pjn/tm1Pjn) mutant mice from a B6-Tulp1(tm1Pjn/tm1Pjn) × AKR/J intercross were genotyped with a panel of single nucleotide polymorphism markers and phenotyped by histology for photoreceptor nuclei remaining at 9 weeks of age. Genotype and phenotype data were correlated and examined with Pseudomarker 2.02 using 128 imputations to map modifier loci. Thresholds for the 63%, 10%, 5%, and 1% significance levels were obtained from 100 permutations. A significant, protective candidate modifier was identified by bioinformatic analysis and confirmed by crossing transgenic mice bearing a protective allele of this gene with Tulp1- and Tub-deficient mice.
A significant, protective modifier locus on chromosome 2 and a suggestive locus on chromosome 13 that increases photoreceptor loss were identified in a B6-Tulp1(tm1Pjn/tm1Pjn) × AKR/J intercross. The chromosome 2 locus mapped near Mtap1a, which encodes a protein associated with microtubule-based intracellular transport and synapse function. The protective Mtap1a(129P2/OlaHsd) allele was shown to reduce photoreceptor loss in both Tulp1(tm1Pjn/tm1Pjn) and Tub(tub/tub) mice.
It was demonstrated that the gene Mtap1a, which modifies hearing loss in Tub(tub/tub) mice, also modifies retinal degeneration in Tub(tub/tub) and Tulp1(tm1Pjn/tm1Pjn) mice. These results suggest that functionally nonredundant members of the TULP family (TUB and TULP1) share a common functional interaction with MTAP1A.
鉴定在表现为少年型视网膜色素变性的纯合 Tulp1(tm1Pjn)和 Tub(tub) 小鼠视网膜中改变光感受器细胞丢失的基因。
通过遗传数量性状基因座分析鉴定修饰基因座。从 B6-Tulp1(tm1Pjn/tm1Pjn)×AKR/J 杂交的 F2 Tulp1(tm1Pjn/tm1Pjn)突变小鼠中,用一组单核苷酸多态性标记物进行基因分型,并通过组织学方法检测 9 周龄时剩余的光感受器核。将基因型和表型数据用 Pseudomarker 2.02 进行关联和检查,用 128 次插补进行 100 次随机排列以定位修饰基因座。从 100 次随机排列中获得 63%、10%、5%和 1%显著性水平的阈值。通过生物信息学分析鉴定出一个显著的保护性候选修饰基因,并通过与 Tulp1 和 Tub 缺陷小鼠交叉繁殖携带该基因保护性等位基因的转基因小鼠进行验证。
在 B6-Tulp1(tm1Pjn/tm1Pjn)×AKR/J 杂交中鉴定出一个位于染色体 2 上的显著保护性修饰基因座和一个位于染色体 13 上的增加光感受器丢失的提示性基因座。该染色体 2 基因座位于 Mtap1a 附近,该基因编码与微管为基础的细胞内运输和突触功能相关的蛋白。保护性 Mtap1a(129P2/OlaHsd)等位基因被证明可以减少 Tulp1(tm1Pjn/tm1Pjn)和 Tub(tub/tub) 小鼠的光感受器丢失。
证明了修饰 Tub(tub/tub) 小鼠听力损失的基因 Mtap1a 也修饰 Tub(tub/tub) 和 Tulp1(tm1Pjn/tm1Pjn) 小鼠的视网膜变性。这些结果表明,TULP 家族(TUB 和 TULP1)的功能非冗余成员与 MTAP1A 具有共同的功能相互作用。