Department of Chemistry, Sharif University of Technology, P.O. BOX:11365-9516, Tehran, Iran.
J Mol Model. 2012 Aug;18(8):3563-76. doi: 10.1007/s00894-012-1354-y. Epub 2012 Feb 14.
N,N',N″-triethylenethiophosphoramide (Thiotepa) and its oxo analogue (Tepa) as the major metabolite are trifunctional alkylating agents with a broad spectrum of antitumor activity. In vivo and vitro studies show alkylation of DNA by Thiotepa and Tepa can follow two pathways, but it remains unclear which pathway represents the precise mechanism of action. In pathway 1, these agents are capable of forming cross-links with DNA molecules via two different mechanisms. In the first mechanism, the ring opening reaction is initiated by protonating the aziridine, which then becomes the primary target of nucleophilic attack by the N7-Guanine. The second one is a direct nucleophilic ring opening of aziridyl group. Thiotepa and Tepa in pathway 2, act as a cell penetrating carrier for aziridine, which is released via hydrolysis. The released aziridine can form a cross-link with N7-Guanine. In this study, we calculated the activation free energy and kinetic rate constant for hydrolysis of these agents and explored interaction of aziridine with Guanine to predict the most probable mechanism by applying density functional theory (DFT) using B3LYP method. In addition, solvent effect was introduced using the conductor-like polarizable continuum model (CPCM) in water, THF and diethylether. Hyperconjugation stabilization factors that have an effect on stability of generated transition state were investigated by natural bond order (NBO) analysis. Furthermore, quantum theory of atoms in molecules (QTAIM) analysis was performed to extract the bond critical points (BCP) properties, because the electron densities can be considered as a good description of the strength of different types of interactions.
三乙烯硫代磷酰胺(噻替派)及其氧化类似物(替派)作为主要代谢物是具有广谱抗肿瘤活性的三功能烷化剂。体内和体外研究表明,噻替派和替派可以通过两种途径对 DNA 进行烷基化,但哪种途径代表确切的作用机制尚不清楚。在途径 1 中,这些试剂能够通过两种不同的机制与 DNA 分子形成交联。在第一种机制中,氮杂环丙烷的环开裂反应是由质子化引发的,然后氮杂环丙烷成为 N7-鸟嘌呤亲核攻击的主要靶标。第二种是氮杂环丙烷的直接亲核环开环。在途径 2 中,噻替派和替派作为氮杂环丙烷的细胞穿透载体,通过水解释放。释放的氮杂环丙烷可以与 N7-鸟嘌呤形成交联。在这项研究中,我们使用密度泛函理论(DFT),通过 B3LYP 方法,计算了这些试剂水解的活化自由能和动力学速率常数,并探索了氮杂环丙烷与鸟嘌呤的相互作用,以预测最可能的机制。此外,在水、THF 和二乙醚中,使用导体相似的极化连续模型(CPCM)引入了溶剂效应。通过自然键轨道(NBO)分析研究了对生成过渡态稳定性有影响的超共轭稳定化因子。此外,进行了量子原子分子理论(QTAIM)分析,以提取键临界点(BCP)性质,因为电子密度可以被认为是对不同类型相互作用强度的良好描述。