Department of Paediatrics, 2nd Faculty of Medicine, Charles University in Prague, Prague, Czech Republic.
Pediatr Diabetes. 2012 Sep;13(6):489-98. doi: 10.1111/j.1399-5448.2011.00845.x. Epub 2012 Feb 15.
Although the literature indicates that ancestral mutations in the glucokinase (GCK) gene are rare, we have detected a high frequency of four prevalent mutations that together are responsible for over one third of the GCK mutations in our Czech National Register of monogenic diabetes. Therefore, we studied their potential ancestral origin in our and neighbouring Polish populations.
We analysed the lineage of four mutations in the GCK gene - p.Glu40Lys (21 apparently unrelated families), p.Leu315His (15 families), p.Gly318Arg (26 families), and p.Val33Ala (10 families) - using genotypes of 16 single nucleotide polymorphisms that span a 14 Mb region around the gene. Haplotypes were reconstructed using Phase and Haploview programmes, and their age was estimated using dmle+.
We found strong evidence that supports ancestral origin of three of the four mutations: the p.Glu40Lys mutation was associated with an 11-marker long conserved haplotype, the p.Leu315His mutation was associated with a 7-marker haplotype, and the p.Gly318Arg mutation was associated with an 8-marker haplotype. None of these haplotypes were detected in the general population with a frequency >0.5%. The ages of the mutations were roughly estimated to be between 82 and 110 generations old (95% credible sets 65-151). The fourth prevalent mutation, p.Val33Ala, lacked statistically significant evidence for the founder effect, although there were some indications for its common origin.
The large proportion of families carrying three ancestral mutations in GCK indicates that the previously assumed rarity of the founder effect with regard to GCK-maturity onset diabetes of the young (MODY) should be reconsidered.
尽管文献表明,葡萄糖激酶(GCK)基因中的祖先突变很少见,但我们在捷克国家单基因糖尿病登记处发现了四种常见突变的高频突变,这些突变共同导致了 GCK 突变的三分之一以上。因此,我们研究了它们在我们和邻近的波兰人群中的潜在祖先起源。
我们使用跨越基因周围 14 Mb 区域的 16 个单核苷酸多态性的基因型分析了 GCK 基因中的四个突变的谱系 - p.Glu40Lys(21 个显然无关的家族),p.Leu315His(15 个家族),p.Gly318Arg(26 个家族)和 p.Val33Ala(10 个家族) - 使用 Phase 和 Haploview 程序重建单倍型,并使用 dmle+估计它们的年龄。
我们发现了强有力的证据支持这四个突变中的三个的祖先起源:p.Glu40Lys 突变与一个 11 个标记长的保守单倍型相关,p.Leu315His 突变与一个 7 个标记的单倍型相关,而 p.Gly318Arg 突变与一个 8 个标记的单倍型相关。这些单倍型在一般人群中的频率均不超过 0.5%。突变的年龄大致估计在 82 到 110 代之间(95%置信区间 65-151)。第四个常见的突变,p.Val33Ala,缺乏创始人效应的统计学证据,但有一些迹象表明其共同起源。
携带 GCK 中三个祖先突变的家庭比例很大,这表明先前假设的葡萄糖激酶-成人发病型糖尿病(MODY)的创始人效应罕见应重新考虑。