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噬菌体 T4 DNA 包装机器的门户大终止酶相互作用暗示了一种分子杠杆机制,用于将 ATP 酶与 DNA 易位偶联。

Portal-large terminase interactions of the bacteriophage T4 DNA packaging machine implicate a molecular lever mechanism for coupling ATPase to DNA translocation.

机构信息

Department of Biology, The Catholic University of America, Washington, DC, USA.

出版信息

J Virol. 2012 Apr;86(8):4046-57. doi: 10.1128/JVI.07197-11. Epub 2012 Feb 15.

Abstract

DNA packaging by double-stranded DNA bacteriophages and herpesviruses is driven by a powerful molecular machine assembled at the portal vertex of the empty prohead. The phage T4 packaging machine consists of three components: dodecameric portal (gp20), pentameric large terminase motor (gp17), and 11- or 12-meric small terminase (gp16). These components dynamically interact and orchestrate a complex series of reactions to produce a DNA-filled head containing one viral genome per head. Here, we analyzed the interactions between the portal and motor proteins using a direct binding assay, mutagenesis, and structural analyses. Our results show that a portal binding site is located in the ATP hydrolysis-controlling subdomain II of gp17. Mutations at key residues of this site lead to temperature-sensitive or null phenotypes. A conserved helix-turn-helix (HLH) that is part of this site interacts with the portal. A recombinant HLH peptide competes with gp17 for portal binding and blocks DNA translocation. The helices apparently provide specificity to capture the cognate prohead, whereas the loop residues communicate the portal interaction to the ATPase center. These observations lead to a hypothesis in which a unique HLH-portal interaction in the symmetrically mismatched complex acts as a lever to position the arginine finger and trigger ATP hydrolysis. Transiently connecting the critical parts of the motor; subdomain I (ATP binding), subdomain II (controlling ATP hydrolysis), and C-domain (DNA movement), the portal-motor interactions might ensure tight coupling between ATP hydrolysis and DNA translocation.

摘要

双链 DNA 噬菌体和疱疹病毒的 DNA 包装由组装在空头部前体顶点的强大分子机器驱动。噬菌体 T4 包装机制由三个组件组成:十二聚体门户(gp20)、五聚体大末端酶马达(gp17)和 11 或 12 聚体小末端酶(gp16)。这些组件动态相互作用,并协调一系列复杂反应,产生一个充满 DNA 的头部,每个头部含有一个病毒基因组。在这里,我们使用直接结合测定、突变分析和结构分析分析了门户和马达蛋白之间的相互作用。我们的结果表明,门户结合位点位于 gp17 的 ATP 水解控制亚结构域 II 中。该位点关键残基的突变导致温度敏感或无效表型。该位点的保守螺旋-转角-螺旋(HLH)与门户相互作用。重组 HLH 肽与 gp17 竞争门户结合并阻断 DNA 易位。这些螺旋显然提供了特异性以捕获同源头部,而环残基将门户相互作用传递给 ATP 酶中心。这些观察结果导致一个假设,即对称错配复合物中的独特 HLH-门户相互作用作为杠杆,定位精氨酸指并触发 ATP 水解。门户-马达相互作用暂时连接马达的关键部分;I 亚结构域(ATP 结合)、II 亚结构域(控制 ATP 水解)和 C 结构域(DNA 运动),可能确保 ATP 水解和 DNA 易位之间的紧密偶联。

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