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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database.一种将肽的串联质谱数据与蛋白质数据库中氨基酸序列相关联的方法。
J Am Soc Mass Spectrom. 1994 Nov;5(11):976-89. doi: 10.1016/1044-0305(94)80016-2.
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Lapatinib induces autophagy, apoptosis and megakaryocytic differentiation in chronic myelogenous leukemia K562 cells.拉帕替尼诱导慢性髓性白血病 K562 细胞自噬、凋亡和巨核细胞分化。
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Kinase domain mutations confer resistance to novel inhibitors targeting JAK2V617F in myeloproliferative neoplasms.激酶结构域突变赋予骨髓增殖性肿瘤对 JAK2V617F 靶向新型抑制剂的耐药性。
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Synergistic action of a RAF inhibitor and a dual PI3K/mTOR inhibitor in thyroid cancer.RAF 抑制剂与双重 PI3K/mTOR 抑制剂在甲状腺癌中的协同作用。
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Global phosphoproteomics reveals crosstalk between Bcr-Abl and negative feedback mechanisms controlling Src signaling.全球磷酸化蛋白质组学揭示了 Bcr-Abl 与控制Src 信号转导的负反馈机制之间的相互作用。
Sci Signal. 2011 Mar 29;4(166):ra18. doi: 10.1126/scisignal.2001314.
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Bruton tyrosine kinase represents a promising therapeutic target for treatment of chronic lymphocytic leukemia and is effectively targeted by PCI-32765.布鲁顿酪氨酸激酶是治疗慢性淋巴细胞白血病的一个很有前途的治疗靶点,它可以被 PCI-32765 有效靶向。
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System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.人类胚胎干细胞分化过程中蛋白质组和磷酸化蛋白质组的全系统时空调控特征。
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The novel JAK inhibitor AZD1480 blocks STAT3 and FGFR3 signaling, resulting in suppression of human myeloma cell growth and survival.新型 JAK 抑制剂 AZD1480 可阻断 STAT3 和 FGFR3 信号通路,从而抑制人骨髓瘤细胞的生长和存活。
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Discovery of 5-chloro-N2-[(1S)-1-(5-fluoropyrimidin-2-yl)ethyl]-N4-(5-methyl-1H-pyrazol-3-yl)pyrimidine-2,4-diamine (AZD1480) as a novel inhibitor of the Jak/Stat pathway.发现 5-氯-N2-[(1S)-1-(5-氟嘧啶-2-基)乙基]-N4-(5-甲基-1H-吡唑-3-基)嘧啶-2,4-二胺(AZD1480)作为 Jak/Stat 通路的新型抑制剂。
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Thymic stromal lymphopoietin-mediated STAT5 phosphorylation via kinases JAK1 and JAK2 reveals a key difference from IL-7-induced signaling.胸腺基质淋巴细胞生成素介导的 STAT5 磷酸化通过激酶 JAK1 和 JAK2,揭示了与 IL-7 诱导的信号转导的关键区别。
Proc Natl Acad Sci U S A. 2010 Nov 9;107(45):19455-60. doi: 10.1073/pnas.1008271107. Epub 2010 Oct 25.

基于 SILAC 的磷酸化蛋白质组学揭示 TSLP 信号通路。

TSLP signaling network revealed by SILAC-based phosphoproteomics.

机构信息

McKusick-Nathans Institute of Genetic Medicine and Department of Biological Chemistry, Johns Hopkins University School of Medicine, 733 N Broadway, Baltimore, 21205 Maryland, USA.

出版信息

Mol Cell Proteomics. 2012 Jun;11(6):M112.017764. doi: 10.1074/mcp.M112.017764. Epub 2012 Feb 16.

DOI:10.1074/mcp.M112.017764
PMID:22345495
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3433886/
Abstract

Thymic stromal lymphopoietin (TSLP) is a cytokine that plays diverse roles in the regulation of immune responses. TSLP requires a heterodimeric receptor complex consisting of IL-7 receptor α subunit and its unique TSLP receptor (gene symbol CRLF2) to transmit signals in cells. Abnormal TSLP signaling (e.g. overexpression of TSLP or its unique receptor TSLPR) contributes to the development of a number of diseases including asthma and leukemia. However, a detailed understanding of the signaling pathways activated by TSLP remains elusive. In this study, we performed a global quantitative phosphoproteomic analysis of the TSLP signaling network using stable isotope labeling by amino acids in cell culture. By employing titanium dioxide in addition to antiphosphotyrosine antibodies as enrichment methods, we identified 4164 phosphopeptides on 1670 phosphoproteins. Using stable isotope labeling by amino acids in cell culture-based quantitation, we determined that the phosphorylation status of 226 proteins was modulated by TSLP stimulation. Our analysis identified activation of several members of the Src and Tec families of kinases including Btk, Lyn, and Tec by TSLP for the first time. In addition, we report TSLP-induced phosphorylation of protein phosphatases such as Ptpn6 (SHP-1) and Ptpn11 (Shp2), which has also not been reported previously. Co-immunoprecipitation assays showed that Shp2 binds to the adapter protein Gab2 in a TSLP-dependent manner. This is the first demonstration of an inducible protein complex in TSLP signaling. A kinase inhibitor screen revealed that pharmacological inhibition of PI-3 kinase, Jak family kinases, Src family kinases or Btk suppressed TSLP-dependent cellular proliferation making them candidate therapeutic targets in diseases resulting from aberrant TSLP signaling. Our study is the first phosphoproteomic analysis of the TSLP signaling pathway that greatly expands our understanding of TSLP signaling and provides novel therapeutic targets for TSLP/TSLPR-associated diseases in humans.

摘要

胸腺基质淋巴细胞生成素(TSLP)是一种细胞因子,在调节免疫反应中发挥多种作用。TSLP 需要由白细胞介素 7 受体 α 亚基和其独特的 TSLP 受体(基因符号 CRLF2)组成的异二聚体受体复合物在细胞中传递信号。异常的 TSLP 信号(例如 TSLP 或其独特受体 TSLPR 的过表达)导致许多疾病的发展,包括哮喘和白血病。然而,对 TSLP 激活的信号通路的详细了解仍然难以捉摸。在这项研究中,我们使用稳定同位素标记的氨基酸在细胞培养中进行了 TSLP 信号网络的全局定量磷酸蛋白质组学分析。通过采用二氧化钛以及抗磷酸酪氨酸抗体作为富集方法,我们在 1670 个磷酸化蛋白上鉴定到了 4164 个磷酸肽。使用稳定同位素标记的氨基酸在细胞培养中的定量方法,我们确定了 226 种蛋白质的磷酸化状态被 TSLP 刺激所调节。我们的分析首次发现 TSLP 激活了 Src 和 Tec 家族激酶的几个成员,包括 Btk、Lyn 和 Tec。此外,我们报告了 TSLP 诱导的蛋白磷酸酶的磷酸化,如 Ptpn6(SHP-1)和 Ptpn11(Shp2),这在以前也没有报道过。免疫共沉淀实验表明,Shp2 以 TSLP 依赖的方式与接头蛋白 Gab2 结合。这是 TSLP 信号中诱导的蛋白质复合物的首次证明。激酶抑制剂筛选显示,PI-3 激酶、Jak 家族激酶、Src 家族激酶或 Btk 的药理学抑制抑制了 TSLP 依赖性细胞增殖,使它们成为由于异常 TSLP 信号导致的疾病的候选治疗靶点。我们的研究是 TSLP 信号通路的首次磷酸蛋白质组学分析,极大地扩展了我们对 TSLP 信号的理解,并为人类 TSLP/TSLPR 相关疾病提供了新的治疗靶点。