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科夫多尔斯基石(Mg(2)PO(4)(OH)·3H(2)O)的重新测定

Redetermination of kovdorskite, Mg(2)PO(4)(OH)·3H(2)O.

作者信息

Morrison Shaunna M, Downs Robert T, Yang Hexiong

机构信息

Department of Geosciences, University of Arizona, 1040 E. 4th Street, Tucson, Arizona 85721-0077, USA.

出版信息

Acta Crystallogr Sect E Struct Rep Online. 2012 Feb 1;68(Pt 2):i12-i13. doi: 10.1107/S1600536812000256. Epub 2012 Jan 11.

DOI:10.1107/S1600536812000256
PMID:22346789
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3274836/
Abstract

The crystal structure of kovdorskite, ideally Mg(2)PO(4)(OH)·3H(2)O (dimagnesium phosphate hydroxide trihydrate), was reported previously with isotropic displacement paramaters only and without H-atom positions [Ovchinnikov et al. (1980 ▶). Dokl. Akad. Nauk SSSR.255, 351-354]. In this study, the kovdorskite structure is redetermined based on single-crystal X-ray diffraction data from a sample from the type locality, the Kovdor massif, Kola Peninsula, Russia, with anisotropic displacement parameters for all non-H atoms, with all H-atom located and with higher precision. Moreover, inconsistencies of the previously published structural data with respect to reported and calculated X-ray powder patterns are also discussed. The structure of kovdorskite contains a set of four edge-sharing MgO(6) octa-hedra inter-connected by PO(4) tetra-hedra and O-H⋯O hydrogen bonds, forming columns and channels parallel to [001]. The hydrogen-bonding system in kovdorskite is formed through the water mol-ecules, with the OH(-) ions contributing little, if any, to the system, as indicated by the long H⋯A distances (>2.50 Å) to the nearest O atoms. The hydrogen-bond lengths determined from the structure refinement agree well with Raman spectroscopic data.

摘要

科夫多尔斯基石的晶体结构,理想化学式为Mg(2)PO(4)(OH)·3H(2)O(三水合二氢氧化镁磷酸盐),之前已有报道,但仅给出了各向同性位移参数且未标明氢原子位置[奥夫钦尼科夫等人(1980年▶)。苏联科学院报告。255, 351 - 354]。在本研究中,基于来自俄罗斯科拉半岛科夫多尔地块典型产地样品的单晶X射线衍射数据,重新测定了科夫多尔斯基石的结构,确定了所有非氢原子的各向异性位移参数,定位了所有氢原子且精度更高。此外,还讨论了先前发表的结构数据与报道的和计算得到的X射线粉末衍射图谱之间的不一致性。科夫多尔斯基石的结构包含一组由PO(4)四面体和O - H⋯O氢键相互连接的四个共边MgO(6)八面体,形成平行于[001]的柱体和通道。科夫多尔斯基石中的氢键体系是通过水分子形成的,OH(-)离子对该体系的贡献很小(如果有贡献的话),这由到最近O原子的长H⋯A距离(>2.50 Å)表明。从结构精修确定的氢键长度与拉曼光谱数据吻合良好。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b375/3274836/d44c71bcb9b3/e-68-00i12-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b375/3274836/5aeb55c565bf/e-68-00i12-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b375/3274836/6d09f510521b/e-68-00i12-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b375/3274836/9bef3544ca31/e-68-00i12-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b375/3274836/d44c71bcb9b3/e-68-00i12-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b375/3274836/5aeb55c565bf/e-68-00i12-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b375/3274836/6d09f510521b/e-68-00i12-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b375/3274836/9bef3544ca31/e-68-00i12-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b375/3274836/d44c71bcb9b3/e-68-00i12-fig4.jpg

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本文引用的文献

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Acta Biomater. 2011 Sep;7(9):3469-75. doi: 10.1016/j.actbio.2011.05.022. Epub 2011 May 25.
2
Raman spectroscopy of newberyite Mg(PO3OH)·3H2O: a cave mineral.镁磷羟磷灰石 Mg(PO3OH)·3H2O 的拉曼光谱:一种洞穴矿物。
Spectrochim Acta A Mol Biomol Spectrosc. 2011 Sep;79(5):1149-53. doi: 10.1016/j.saa.2011.04.035. Epub 2011 Apr 22.
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Biocompatibility of magnesium phosphate minerals and their stability under physiological conditions.
磷酸镁矿物的生物相容性及其在生理条件下的稳定性。
Acta Biomater. 2011 Jun;7(6):2678-85. doi: 10.1016/j.actbio.2011.02.007. Epub 2011 Feb 13.
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A short history of SHELX.SHELX简史。
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