Department of Chemistry, School of Life Sciences, University of Sussex, Falmer, Brighton BN1 9QJ, UK.
J Phys Chem A. 2012 Mar 22;116(11):3035-41. doi: 10.1021/jp300032m. Epub 2012 Mar 12.
The metal dication Pb(II) is known to promote catalytic cleavage of the sugar-phosphate backbone in tRNA. The mechanism proposed to achieve this step requires that the Pb(II)OH(-) moiety act as a nucleophile and alter the local acidity of surrounding water molecules. MP2 calculations investigating the effect that nonaqueous bases have on the stability of dihydrated-Pb(II) show that the height and position of the proton-transfer barrier are sensitive to the presence of a single N- or O-coordinating "spectator" ligand and that, with the addition of two ligands coordinated directly to the Pb(II) center, the equilibrium for the hydrolysis reaction can shift to the left, thus making the Pb(II)-hydrate complex more stable than the Pb(II)-hydroxide complex. The calculations reveal a good correlation between the gas-phase basicities of nonaqueous ligands coordinated to the metal center and the barriers to proton transfer in Pb(H(2)O)(2). In terms of the Pb(II)-induced hydrolysis of tRNA, these results indicate that the coordination of Pb(II)-OH(-) to uracil and cytosine in tRNA increases the basicity of the hydroxyl group and promotes nucleophilic attack of H(+).
已知金属二价铅离子 (Pb(II)) 能促进 tRNA 中糖磷酸骨架的催化断裂。实现这一步骤的机制需要 Pb(II)OH(-) 部分作为亲核试剂,并改变周围水分子的局部酸度。研究非水碱对二水合-Pb(II) 稳定性影响的 MP2 计算表明,质子转移势垒的高度和位置对单个 N 或 O 配位“旁观者”配体的存在敏感,并且随着两个配体直接配位到 Pb(II) 中心,水解反应的平衡会向左移动,从而使 Pb(II)-水合配合物比 Pb(II)-氢氧化物配合物更稳定。计算结果表明,与配位在金属中心上的非水配体的气相碱度之间存在很好的相关性,以及 Pb(H2O)2 中质子转移的势垒。就 Pb(II) 诱导的 tRNA 水解而言,这些结果表明 Pb(II)-OH(-) 与 tRNA 中尿嘧啶和胞嘧啶的配位增加了羟基的碱性,并促进了 H(+) 的亲核攻击。