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利用磁小体生成菌 Magnetospirillum magneticum AMB-1 的双杂交基因组 DNA 文库筛选 MamK 和 MamJ 蛋白的互作蛋白。

Screening for the interacting partners of the proteins MamK & MamJ by two-hybrid genomic DNA library of Magnetospirillum magneticum AMB-1.

机构信息

Beijing Key Laboratory of Bioelectromagnetics, Institute of Electrical Engineering, Chinese Academy of Sciences, Beijing, China.

出版信息

Curr Microbiol. 2012 Jun;64(6):515-23. doi: 10.1007/s00284-012-0099-2. Epub 2012 Mar 1.

DOI:10.1007/s00284-012-0099-2
PMID:22382918
Abstract

Magnetotactic bacteria are a group of prokaryotes capable of sensing and navigating along the earth's magnetic field. The linear alignment of magnetosomes, which acts as a compass needle for orientation, is dependent on the proteins MamJ (amb0964) & MamK (amb0965). We constructed Magnetospirillum magneticum AMB-1 two-hybrid DNA libraries by fusing the random genomic fragments of AMB-1 to the N-terminal domain of the α-subunit of RNA polymerase in vector pTRG and used as preys. The genes mamJ & mamK were cloned in frame with the λ repressor protein (λ cI) in vector pBT and used as baits for screening the binding partners. After preliminary screening, we further confirmed the candidate interactions between selected protein pairs. The results showed that there were relatively strong interactions between MamK versus Amb3498 (flagella motor switch protein fliM), versus Amb0854 MCPs (signal domain of methyl-accepting chemotaxis protein) and versus Amb3568 (GGDEF domain-containing protein), respectively. MamJ versus Amb1722 (hypothetical protein), MamJ versus MamK, and MamK versus Amb1807 (cation transport ATPase) exhibited low level of interaction. Although the TPR repeat protein MamA (amb0971) showed no interaction with either MamJ or MamK, the TPR repeat protein Amb0024 with more motif sequences exhibited relatively strong interaction with MamK. Among the identified proteins, all categorized as signal transduction-related displayed interaction only with MamK and without MamJ, suggesting that magnetotaxis via MamK in Magnetospirillum magneticum AMB-1 might be somehow concerned with the widely accepted chemotaxis mechanism in bacteria.

摘要

趋磁细菌是一类能够感知和沿着地球磁场导航的原核生物。磁小体的线性排列作为定向的罗盘针,依赖于蛋白 MamJ(amb0964)和 MamK(amb0965)。我们通过将 AMB-1 的随机基因组片段融合到载体 pTRG 的 RNA 聚合酶α亚基的 N 端结构域中,构建了趋磁螺菌 AMB-1 双杂交 DNA 文库,并将其用作诱饵。mamJ 和 mamK 基因与 λ 阻遏蛋白(λ cI)在载体 pBT 中框内克隆,并用作筛选结合伴侣的诱饵。经过初步筛选,我们进一步证实了所选蛋白对之间的候选相互作用。结果表明,MamK 与 Amb3498(鞭毛运动开关蛋白 fliM)、与 Amb0854 MCPs(甲基接受趋化性蛋白的信号域)和与 Amb3568(含有 GGDEF 结构域的蛋白)之间存在相对较强的相互作用。MamJ 与 Amb1722(假设蛋白)、MamJ 与 MamK 以及 MamK 与 Amb1807(阳离子转运 ATP 酶)之间表现出低水平的相互作用。尽管 TPR 重复蛋白 MamA(amb0971)与 MamJ 或 MamK 均无相互作用,但具有更多 motif 序列的 TPR 重复蛋白 Amb0024 与 MamK 表现出较强的相互作用。在鉴定出的蛋白质中,所有归类为信号转导相关的蛋白质仅与 MamK 相互作用,而与 MamJ 无相互作用,这表明趋磁螺菌 AMB-1 中的磁导向途径与细菌中广泛接受的趋化机制有关。

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本文引用的文献

1
Magnetosome chains are recruited to cellular division sites and split by asymmetric septation.磁小体链被招募到细胞分裂部位,并通过不对称分裂而分裂。
Mol Microbiol. 2011 Dec;82(6):1316-29. doi: 10.1111/j.1365-2958.2011.07874.x. Epub 2011 Nov 23.
2
MamK, a bacterial actin, forms dynamic filaments in vivo that are regulated by the acidic proteins MamJ and LimJ.MamK 是一种细菌肌动蛋白,在体内形成动态丝,受酸性蛋白 MamJ 和 LimJ 调控。
Mol Microbiol. 2011 Oct;82(2):342-54. doi: 10.1111/j.1365-2958.2011.07815.x. Epub 2011 Sep 14.
3
Self-recognition mechanism of MamA, a magnetosome-associated TPR-containing protein, promotes complex assembly.
磁小体生物发生在趋磁细菌中。
Nat Rev Microbiol. 2016 Sep 13;14(10):621-37. doi: 10.1038/nrmicro.2016.99.
4
Comparative Subcellular Localization Analysis of Magnetosome Proteins Reveals a Unique Localization Behavior of Mms6 Protein onto Magnetite Crystals.磁小体蛋白的亚细胞定位比较分析揭示了Mms6蛋白在磁铁矿晶体上的独特定位行为。
J Bacteriol. 2016 Sep 22;198(20):2794-802. doi: 10.1128/JB.00280-16. Print 2016 Oct 15.
5
Structure of the magnetosome-associated actin-like MamK filament at subnanometer resolution.磁小体相关肌动蛋白样MamK细丝在亚纳米分辨率下的结构
Protein Sci. 2017 Jan;26(1):93-102. doi: 10.1002/pro.2979. Epub 2016 Aug 19.
6
From invagination to navigation: The story of magnetosome-associated proteins in magnetotactic bacteria.从内陷到导航:趋磁细菌中磁小体相关蛋白的故事
Protein Sci. 2016 Feb;25(2):338-51. doi: 10.1002/pro.2827. Epub 2015 Nov 3.
7
Bacterial actins and their diversity.细菌肌动蛋白及其多样性。
Biochemistry. 2013 Oct 8;52(40):6928-39. doi: 10.1021/bi4010792. Epub 2013 Sep 24.
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Proc Natl Acad Sci U S A. 2011 Aug 16;108(33):E480-7. doi: 10.1073/pnas.1103367108. Epub 2011 Jul 22.
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Mol Microbiol. 2011 May;80(4):1075-87. doi: 10.1111/j.1365-2958.2011.07631.x. Epub 2011 Mar 30.
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mamO and mamE genes are essential for magnetosome crystal biomineralization in Magnetospirillum gryphiswaldense MSR-1.mamO 和 mamE 基因对于嗜甲基球菌 MSR-1 中的磁铁矿晶体生物矿化是必需的。
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6
Loss of the actin-like protein MamK has pleiotropic effects on magnetosome formation and chain assembly in Magnetospirillum gryphiswaldense.肌动蛋白样蛋白MamK的缺失对嗜盐碱螺旋菌磁小体的形成和链组装具有多效性影响。
Mol Microbiol. 2010 Jul 1;77(1):208-24. doi: 10.1111/j.1365-2958.2010.07202.x. Epub 2010 May 12.
7
An MCP-like protein interacts with the MamK cytoskeleton and is involved in magnetotaxis in Magnetospirillum magneticum AMB-1.一种类似于 MCP 的蛋白与 MamK 细胞骨架相互作用,并参与趋磁螺菌 AMB-1 的趋磁作用。
J Mol Biol. 2010 Jul 16;400(3):309-22. doi: 10.1016/j.jmb.2010.05.011. Epub 2010 May 13.
8
Visualization and structural analysis of the bacterial magnetic organelle magnetosome using atomic force microscopy.利用原子力显微镜对细菌磁体器官——磁小体进行可视化和结构分析。
Proc Natl Acad Sci U S A. 2010 May 18;107(20):9382-7. doi: 10.1073/pnas.1001870107. Epub 2010 May 3.
9
Comprehensive genetic dissection of the magnetosome gene island reveals the step-wise assembly of a prokaryotic organelle.全面的磁小体基因岛遗传剖析揭示了原核细胞器的逐步组装。
Proc Natl Acad Sci U S A. 2010 Mar 23;107(12):5593-8. doi: 10.1073/pnas.0914439107. Epub 2010 Mar 8.
10
Genomics, genetics, and cell biology of magnetosome formation.磁小体形成的基因组学、遗传学和细胞生物学
Annu Rev Microbiol. 2009;63:501-21. doi: 10.1146/annurev.micro.62.081307.162908.