Suppr超能文献

聚醚生物合成中环反-Baldwin 键的酶催化作用。

Enzymatic catalysis of anti-Baldwin ring closure in polyether biosynthesis.

机构信息

National University of Singapore, Department of Biological Sciences, 14 Science Drive 4, 117543 Singapore.

出版信息

Nature. 2012 Mar 4;483(7389):355-8. doi: 10.1038/nature10865.

Abstract

Polycyclic polyether natural products have fascinated chemists and biologists alike owing to their useful biological activity, highly complex structure and intriguing biosynthetic mechanisms. Following the original proposal for the polyepoxide origin of lasalocid and isolasalocid and the experimental determination of the origins of the oxygen and carbon atoms of both lasalocid and monensin, a unified stereochemical model for the biosynthesis of polyether ionophore antibiotics was proposed. The model was based on a cascade of nucleophilic ring closures of postulated polyepoxide substrates generated by stereospecific oxidation of all-trans polyene polyketide intermediates. Shortly thereafter, a related model was proposed for the biogenesis of marine ladder toxins, involving a series of nominally disfavoured anti-Baldwin, endo-tet epoxide-ring-opening reactions. Recently, we identified Lsd19 from the Streptomyces lasaliensis gene cluster as the epoxide hydrolase responsible for the epoxide-opening cyclization of bisepoxyprelasalocid A to form lasalocid A. Here we report the X-ray crystal structure of Lsd19 in complex with its substrate and product analogue to provide the first atomic structure-to our knowledge-of a natural enzyme capable of catalysing the disfavoured epoxide-opening cyclic ether formation. On the basis of our structural and computational studies, we propose a general mechanism for the enzymatic catalysis of polyether natural product biosynthesis.

摘要

多环聚醚天然产物以其有用的生物活性、高度复杂的结构和有趣的生物合成机制而引起了化学家们和生物学家们的兴趣。继最初提出的 lasalocid 和 isolasalocid 的多环氧起源以及 both lasalocid 和 monensin 的氧和碳原子起源的实验确定之后,提出了聚醚离子载体抗生素生物合成的统一立体化学模型。该模型基于立体特异性氧化全反式多烯聚酮中间体生成的假定多环氧底物的亲核环封闭级联反应。此后不久,提出了一个涉及一系列名义上不利的反-Baldwin、内-四环氧开环反应的海洋梯毒素生物发生的相关模型。最近,我们从 Streptomyces lasaliensis 基因簇中鉴定出 Lsd19 是负责 bisepoxyprelasalocid A 开环环化形成 lasalocid A 的环氧化物水解酶。在这里,我们报告了 Lsd19 与其底物和产物类似物的 X 射线晶体结构,提供了第一个(据我们所知)能够催化不利的环氧化物开环环状醚形成的天然酶的原子结构。基于我们的结构和计算研究,我们提出了聚醚天然产物生物合成中酶催化的一般机制。

相似文献

1
Enzymatic catalysis of anti-Baldwin ring closure in polyether biosynthesis.
Nature. 2012 Mar 4;483(7389):355-8. doi: 10.1038/nature10865.
2
Epoxide hydrolase-lasalocid a structure provides mechanistic insight into polyether natural product biosynthesis.
J Am Chem Soc. 2015 Jan 14;137(1):86-9. doi: 10.1021/ja511374k. Epub 2014 Dec 31.
5
Biosynthetic machinery of ionophore polyether lasalocid: enzymatic construction of polyether skeleton.
Curr Opin Chem Biol. 2013 Aug;17(4):555-61. doi: 10.1016/j.cbpa.2013.06.004. Epub 2013 Jun 21.
6
Identification of a gene cluster of polyether antibiotic lasalocid from Streptomyces lasaliensis.
Biosci Biotechnol Biochem. 2009 Jan;73(1):169-76. doi: 10.1271/bbb.80631. Epub 2009 Jan 7.
9
Biochemistry: favouring the unfavoured.
Nature. 2012 Mar 14;483(7389):285-6. doi: 10.1038/483285a.
10
Allosteric regulation of epoxide opening cascades by a pair of epoxide hydrolases in monensin biosynthesis.
ACS Chem Biol. 2014 Feb 21;9(2):562-9. doi: 10.1021/cb4006485. Epub 2013 Dec 13.

引用本文的文献

3
Structural Basis of Sequential Enantioselective Epoxidation by a Flavin-Dependent Monooxygenase in Lasalocid A Biosynthesis.
Angew Chem Int Ed Engl. 2025 Jun 10;64(24):e202504982. doi: 10.1002/anie.202504982. Epub 2025 Apr 26.
4
Combinatorial Biosynthesis Creates a Novel Aglycone Polyether with High Potency and Low Side Effects Against Bladder Cancer.
Adv Sci (Weinh). 2024 Aug;11(32):e2404668. doi: 10.1002/advs.202404668. Epub 2024 Jun 27.
6
Two types of coumarins-specific enzymes complete the last missing steps in pyran- and furanocoumarins biosynthesis.
Acta Pharm Sin B. 2024 Feb;14(2):869-880. doi: 10.1016/j.apsb.2023.10.016. Epub 2023 Oct 26.
7
Triepoxide formation by a flavin-dependent monooxygenase in monensin biosynthesis.
Nat Commun. 2023 Oct 7;14(1):6273. doi: 10.1038/s41467-023-41889-0.
8
Biosynthesis of Polycyclic Natural Products from Conjugated Polyenes via Tandem Isomerization and Pericyclic Reactions.
J Am Chem Soc. 2023 Jun 28;145(25):13520-13525. doi: 10.1021/jacs.3c02380. Epub 2023 Jun 13.
10
Modeling Catalysis in Allosteric Enzymes: Capturing Conformational Consequences.
Top Catal. 2022 Feb;65(1-4):165-186. doi: 10.1007/s11244-021-01521-1. Epub 2021 Nov 9.

本文引用的文献

1
Cyclizations of alkynes: revisiting Baldwin's rules for ring closure.
Chem Rev. 2011 Nov 9;111(11):6513-56. doi: 10.1021/cr200164y. Epub 2011 Aug 23.
3
Features and development of Coot.
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501. doi: 10.1107/S0907444910007493. Epub 2010 Mar 24.
4
XDS.
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):125-32. doi: 10.1107/S0907444909047337. Epub 2010 Jan 22.
5
Molecular replacement with MOLREP.
Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):22-5. doi: 10.1107/S0907444909042589. Epub 2009 Dec 21.
7
Identification of a gene cluster of polyether antibiotic lasalocid from Streptomyces lasaliensis.
Biosci Biotechnol Biochem. 2009 Jan;73(1):169-76. doi: 10.1271/bbb.80631. Epub 2009 Jan 7.
9
CDD: specific functional annotation with the Conserved Domain Database.
Nucleic Acids Res. 2009 Jan;37(Database issue):D205-10. doi: 10.1093/nar/gkn845. Epub 2008 Nov 4.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验