UZ Leuven, Laboratory of Forensic Genetics and Molecular Archaeology, UZ Leuven, Leuven, Belgium.
Forensic Sci Int Genet. 2012 Sep;6(5):588-93. doi: 10.1016/j.fsigen.2012.02.001. Epub 2012 Mar 4.
We present an automated method to generate DNA profiles from replicate PCRs by combining advantages of the composite and consensus method by a system of brackets in which an allelic balance threshold is used as a variable to separate DNA-profiles of major from minor donors. Through the analysis of artificial low (125 pg) and high (250 pg) template three-person mixtures with low (1:1.5:3) and high (1:5:10) donor ratios we demonstrate the usefulness of a tool to determine the optimal allelic balance threshold within a locus. The automated extraction of dominant profiles saves considerable amounts of time when producing composite-consensus profiles. Drop-in/drop-out rates are produced and a comparison is made with an alternative open source script to evaluate the dominant profiles generated. By introducing this script into the forensic community we hope to increase awareness of much needed collaborative efforts with bioinformaticians and statisticians to develop forensic open source software scripts.
我们提出了一种自动化的方法,通过括号系统结合复合和共识方法的优点,从重复的 PCR 中生成 DNA 图谱,其中等位基因平衡阈值被用作变量,以分离主要供体和次要供体的 DNA 图谱。通过对人工低(125 pg)和高(250 pg)模板三人混合物(低[1:1.5:3]和高[1:5:10]供体比)的分析,我们证明了一种工具在确定最佳等位基因平衡阈值在一个基因座内的有用性。在生成复合-一致图谱时,自动提取显性图谱可节省大量时间。产生了滴入/滴出率,并与替代的开源脚本进行了比较,以评估生成的显性图谱。通过将该脚本引入法医界,我们希望提高人们对与生物信息学家和统计学家合作开发法医开源软件脚本的迫切需求的认识。