Grechko V V
Mol Biol (Mosk). 2011 Sep-Oct;45(5):765-92.
Several aspects of the functional role of non-protein-coding DNA elements in the cell life and taxa evolution were discussed in connection with modern views on three-dimensional regulatory network as a basis for life support and evolution. In accordance with this problem, the leading role of duplication and multiplication of any DNA fragments (from single nucleotides to segmental duplications) in origination of genome structure and reshaping were considered in relationships with chromatin proteins. By this way the diversities in genome and chromosome architectonics leads to diversity of morphogenesis. The regulation and plasticity of the genome is determined by the structure, plasticity and evolution of genomic satellite and dispersed repetitive elements, which, being tightly bound with life phylogeny, result in somatic and inherited changes. Repeated sequences take part and perform some epigenetic regulation via repeats themselves, their modifications, or via their RNA transcripts. There is a growing evidence that the usage of methaphoric designations of protein-noncoding sequences as "egoistic, junk or parasitic" are senseless and useless. To the contrary, the hypothesis is formulated that the repetitive non-coding DNA part could be considered as a main substrate of life, something like a "carcass" serving as a basis for protein-coding sequences. The own molecular evolution of this carcass defines the pattern of DNA transcription and then evolution of structural proteins and morphological differentiation. Genes involved in main energetic, "house-keeping" and metabolic processes are forming some kind of the protecting envelope for the hereditary material, and also provides the enzymatic pathway of replication, transcription and epigenetic regulation.
结合关于三维调控网络作为生命维持和进化基础的现代观点,讨论了非蛋白质编码DNA元件在细胞生命和生物分类进化中的功能作用的几个方面。根据这个问题,考虑了任何DNA片段(从单核苷酸到节段性重复)的复制和倍增在基因组结构起源和重塑中的主导作用与染色质蛋白的关系。通过这种方式,基因组和染色体结构的多样性导致形态发生的多样性。基因组的调控和可塑性由基因组卫星和分散重复元件的结构、可塑性和进化决定,这些元件与生命系统发育紧密相连,导致体细胞和遗传变化。重复序列通过自身、其修饰或其RNA转录本参与并执行一些表观遗传调控。越来越多的证据表明,将蛋白质非编码序列比喻为“自私、垃圾或寄生”的说法是毫无意义和无用的。相反,有人提出假设,重复的非编码DNA部分可被视为生命的主要底物,类似于作为蛋白质编码序列基础的“框架”。这个框架自身的分子进化决定了DNA转录模式,进而决定了结构蛋白的进化和形态分化。参与主要能量、“管家”和代谢过程的基因形成了某种遗传物质的保护包膜,也提供了复制、转录和表观遗传调控的酶促途径。