Kvitko Brian H, Bruckbauer Steven, Prucha John, McMillan Ian, Breland Erin J, Lehman Stephanie, Mladinich Katie, Choi Kyoung-Hee, Karkhoff-Schweizer Roxann, Schweizer Herbert P
Department of Microbiology, Immunology and Pathology, Colorado State University, IDRC at Foothills Campus, 0922 Campus Delivery, Fort Collins, CO 80523, USA.
BMC Res Notes. 2012 Mar 20;5:157. doi: 10.1186/1756-0500-5-157.
The R6K replicon is one of the best studied bacterial plasmid replicons. Replication of the R6K plasmid and derivatives harboring its γ origin of replication (ori(R6Kγ)) is dependent on the pir gene-encoded π protein. Originally encoded by R6K, this protein is usually provided in trans in hosts engineered to support replication of plasmids harboring ori(R6Kγ). In Escherichia coli this is commonly achieved by chromosomal integration of pir either via lysogenization with a λpir phage or homologous recombination at a pre-determined locus.
Current methods for construction of host strains for ori(R6Kγ)-containing plasmids involve procedures that do not allow selection for presence of the pir gene and require cumbersome and time-consuming screening steps. In this study, we established a mini-Tn7-based method for rapid and reliable construction of pir+ host strains. Using a curable mini-Tn7 delivery plasmid, pir expressing derivatives of several commonly used E. coli cloning and mobilizer strains were isolated using both the wild-type pir+ gene as well as the copy-up pir-116 allele. In addition, we isolated pir+ and pir-116 expressing derivatives of a clinical isolate of Salmonella enterica serovar Typhimurium. In both E. coli and S. enterica serovar Typhimurium, the presence of the pir+ wild-type or pir-116 alleles allowed the replication of ori(R6Kγ)-containing plasmids.
A mini-Tn7 system was employed for rapid and reliable engineering of E. coli and S. enterica serovar Typhimurium host strains for plasmids containing ori(R6Kγ). Since mini-Tn7 elements transpose in most, if not all, Gram negative bacteria, we anticipate that with relatively minor modifications this newly established method will for the first time allow engineering of other bacterial species to enable replication of plasmids with ori(R6Kγ).
R6K复制子是研究最为深入的细菌质粒复制子之一。R6K质粒及其携带γ复制起点(ori(R6Kγ))的衍生物的复制依赖于pir基因编码的π蛋白。该蛋白最初由R6K编码,通常在经过工程改造以支持携带ori(R6Kγ)的质粒复制的宿主中通过反式提供。在大肠杆菌中,这通常通过将pir基因整合到染色体上实现,方法是用λpir噬菌体进行溶原化或在预定位点进行同源重组。
目前构建用于含ori(R6Kγ)质粒的宿主菌株的方法涉及的程序无法对pir基因的存在进行选择,并且需要繁琐且耗时的筛选步骤。在本研究中,我们建立了一种基于mini-Tn7的方法,用于快速可靠地构建pir+宿主菌株。使用一种可治愈的mini-Tn7递送质粒,利用野生型pir+基因以及拷贝上调的pir-116等位基因,分离出了几种常用大肠杆菌克隆和动员菌株的pir表达衍生物。此外,我们还分离出了肠炎沙门氏菌鼠伤寒血清型临床分离株的pir+和pir-116表达衍生物。在大肠杆菌和肠炎沙门氏菌鼠伤寒血清型中,pir+野生型或pir-116等位基因的存在都允许含ori(R6Kγ)的质粒进行复制。
采用mini-Tn7系统对大肠杆菌和肠炎沙门氏菌鼠伤寒血清型宿主菌株进行快速可靠的工程改造,使其适用于含ori(R6Kγ)的质粒。由于mini-Tn7元件可在大多数(如果不是全部)革兰氏阴性细菌中发生转座,我们预计,经过相对较小的修改,这种新建立的方法将首次能够对其他细菌物种进行工程改造,以使含ori(R6Kγ)的质粒能够复制。