Institute of Industrial Chemistry, Nanjing University of Science and Technology, Nanjing, 210094, China.
J Mol Model. 2012 Sep;18(9):4007-12. doi: 10.1007/s00894-012-1398-z. Epub 2012 Mar 27.
The interaction of seven pamidronate bisphosphonate (Pami-BPs) and its analogs with the hydroxyapatite (HAP) (100) surface was studied using density functional theory (DFT) and molecular dynamic (MD) methods. Partial Mulliken oxygen atomic charges in protonated structures were calculated at the level of B3LYP/6-31G*. The MD simulation was performed using the Discover module of Material Studio by compass force field. The results indicate the abilities of donating electrons of the oxygen atoms of the phosphate groups that are closely associated with the antiresorptive potency. The binding energies, including vdw and electrostatic, are used to discuss the mechanism of antiresorption. The results of calculations show that the strength of interaction of the HAP (100) face with the bisphosphonates is N(4) > N(6) > N(7) > N(5) > N(3) > N(2) > N(1) according to their experimental pIC(50) values.
采用密度泛函理论(DFT)和分子动力学(MD)方法研究了七种帕米膦酸盐双膦酸(Pami-BPs)及其类似物与羟基磷灰石(HAP)(100)表面的相互作用。在 B3LYP/6-31G*水平上计算了质子化结构中部分 Mulliken 氧原子电荷。使用 Material Studio 的 Discover 模块和 compass 力场进行 MD 模拟。结果表明,与抗吸收能力密切相关的磷酸基团氧原子的供电子能力。结合能,包括 vdw 和静电,用于讨论抗吸收的机制。计算结果表明,根据实验 pIC(50)值,HAP(100)面与双膦酸盐的相互作用强度为 N(4)>N(6)>N(7)>N(5)>N(3)>N(2)>N(1)。