School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing, 210093, PR China.
Phys Chem Chem Phys. 2012 Jun 7;14(21):7854-62. doi: 10.1039/c2cp23916g. Epub 2012 Mar 28.
A refined cluster-in-molecule (CIM) method for local correlation calculations of large molecules is presented. In the present work, two new strategies are introduced to further improve the CIM approach: (1) Some medium-range electron correlation energies, which are neglected in the previous CIM approach, are taken into account. (2) A much simpler procedure using only a distance threshold is used to construct various clusters. To cover the medium-range correlation effect as much as possible, some two-atom-centered clusters are built, in addition to one-atom-centered clusters. Our test calculations at the second order perturbation theory (MP2) level show that the refined CIM method can recover about 99.9% of the conventional MP2 correlation energy using an appropriate distance threshold. The accuracy of the present CIM method is capable of providing reliable relative energies of medium-sized systems such as polyalanines with 10 residues, and water molecules with 50 water molecules. For polyalanines with up to 30 residues, we have demonstrated that the computational cost of the CIM-MP2 calculation increases linearly with the molecular size, but the required memory and disc-space do not need to increase for large systems. The improved CIM method has been used to compute the relative energy of ice-like (H(2)O)(96) clusters (with 2400 basis functions) and to predict the dimerization energy of a double-helical foldamer (with 2330 basis functions). The present CIM method is expected to be a practical local correlation method for describing the relative energies of large systems.
一种改进的分子内簇(CIM)方法,用于大分子的局域相关计算。在目前的工作中,引入了两种新的策略来进一步改进 CIM 方法:(1)考虑了以前 CIM 方法中忽略的一些中程电子相关能量。(2)使用仅距离阈值的更简单的程序来构建各种簇。为了尽可能涵盖中程相关效应,除了单原子中心簇外,还构建了一些双原子中心簇。我们在二阶微扰理论(MP2)水平上的测试计算表明,使用适当的距离阈值,改进的 CIM 方法可以恢复约 99.9%的常规 MP2 相关能量。本 CIM 方法的准确性能够为具有 10 个残基的聚丙氨酸等中等大小的系统以及具有 50 个水分子的水提供可靠的相对能量。对于多达 30 个残基的聚丙氨酸,我们已经证明 CIM-MP2 计算的计算成本随分子尺寸线性增加,但对于大型系统,所需的内存和磁盘空间不需要增加。改进的 CIM 方法已用于计算冰状(H(2)O)(96)簇的相对能量(具有 2400 个基函数)和预测双螺旋折叠物的二聚化能(具有 2330 个基函数)。本 CIM 方法有望成为描述大系统相对能量的实用局域相关方法。