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兴奋皮层和记忆模型成功预测了新伪足动力学。

An excitable cortex and memory model successfully predicts new pseudopod dynamics.

机构信息

Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America.

出版信息

PLoS One. 2012;7(3):e33528. doi: 10.1371/journal.pone.0033528. Epub 2012 Mar 22.

Abstract

Motile eukaryotic cells migrate with directional persistence by alternating left and right turns, even in the absence of external cues. For example, Dictyostelium discoideum cells crawl by extending distinct pseudopods in an alternating right-left pattern. The mechanisms underlying this zig-zag behavior, however, remain unknown. Here we propose a new Excitable Cortex and Memory (EC&M) model for understanding the alternating, zig-zag extension of pseudopods. Incorporating elements of previous models, we consider the cell cortex as an excitable system and include global inhibition of new pseudopods while a pseudopod is active. With the novel hypothesis that pseudopod activity makes the local cortex temporarily more excitable--thus creating a memory of previous pseudopod locations--the model reproduces experimentally observed zig-zag behavior. Furthermore, the EC&M model makes four new predictions concerning pseudopod dynamics. To test these predictions we develop an algorithm that detects pseudopods via hierarchical clustering of individual membrane extensions. Data from cell-tracking experiments agrees with all four predictions of the model, revealing that pseudopod placement is a non-Markovian process affected by the dynamics of previous pseudopods. The model is also compatible with known limits of chemotactic sensitivity. In addition to providing a predictive approach to studying eukaryotic cell motion, the EC&M model provides a general framework for future models, and suggests directions for new research regarding the molecular mechanisms underlying directional persistence.

摘要

游动的真核细胞通过交替的左右转弯来保持定向持久性,即使在没有外部线索的情况下也是如此。例如,Dictyostelium discoideum 细胞通过以交替的右-左模式延伸独特的伪足来爬行。然而,这种之字形行为的机制仍然未知。在这里,我们提出了一个新的兴奋皮层和记忆(EC&M)模型,用于理解伪足的交替、之字形延伸。我们结合了以前模型的元素,将细胞皮层视为一个兴奋系统,并在伪足活跃时全局抑制新的伪足。根据新的假设,伪足活动使局部皮层暂时更兴奋——从而为以前的伪足位置创建记忆——该模型再现了实验观察到的之字形行为。此外,EC&M 模型对伪足动力学做出了四个新的预测。为了验证这些预测,我们开发了一种通过对单个膜延伸进行层次聚类来检测伪足的算法。来自细胞跟踪实验的数据与模型的所有四个预测一致,表明伪足的放置是一个非马尔可夫过程,受到先前伪足动力学的影响。该模型也与已知的趋化敏感性限制兼容。除了为研究真核细胞运动提供一种预测方法外,EC&M 模型还为未来的模型提供了一个通用框架,并为研究定向持久性的分子机制提供了新的研究方向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/31ed/3310873/144e7ce0e502/pone.0033528.g001.jpg

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