Center for Models of Life, Niels Bohr Institute, University of Copenhagen, Blegdamsvej 17, DK-2100 Copenhagen, Denmark.
Nucleic Acids Res. 2012 Aug;40(14):6424-34. doi: 10.1093/nar/gks297. Epub 2012 Apr 11.
Many toxin-antitoxin (TA) loci are known to strongly repress their own transcription. This auto-inhibition is often called 'conditional cooperativity' as it relies on cooperative binding of TA complexes to operator DNA that occurs only when toxins are in a proper stoichiometric relationship with antitoxins. There has recently been an explosion of interest in TA systems due to their role in bacterial persistence, however the role of conditional cooperativity is still unclear. We reveal the biological function of conditional cooperativity by constructing a mathematical model of the well studied TA system, relBE of Escherichia coli. We show that the model with the in vivo and in vitro established parameters reproduces experimentally observed response to nutritional stress. We further demonstrate that conditional cooperativity stabilizes the level of antitoxin in rapidly growing cells such that random induction of relBE is minimized. At the same time it enables quick removal of free toxin when the starvation is terminated.
许多毒素-抗毒素 (TA) 基因座被证实能强烈抑制自身转录。这种自我抑制通常被称为“条件协同性”,因为它依赖于 TA 复合物与操纵子 DNA 的协同结合,而这种结合只有在毒素与抗毒素处于适当的化学计量关系时才会发生。由于 TA 系统在细菌持久性中的作用,最近人们对 TA 系统产生了浓厚的兴趣,但条件协同性的作用仍不清楚。我们通过构建一个经过充分研究的 TA 系统 relBE 的数学模型,揭示了条件协同性的生物学功能。我们表明,该模型具有体内和体外建立的参数,可以重现对营养胁迫的实验观察到的反应。我们进一步证明,条件协同性稳定了抗毒素的水平,使得随机诱导 relBE 的情况最小化。同时,它使当饥饿终止时能够快速去除游离毒素。