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多体相关性在确定平衡结构粗粒模型势中的作用。

The role of many-body correlations in determining potentials for coarse-grained models of equilibrium structure.

机构信息

Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.

出版信息

J Phys Chem B. 2012 Jul 26;116(29):8621-35. doi: 10.1021/jp3002004. Epub 2012 Jun 1.

DOI:10.1021/jp3002004
PMID:22564079
Abstract

Coarse-grained (CG) models often employ pair potentials that are parametrized to reproduce radial distribution functions (rdf's) determined for an atomistic model. This implies that the CG model must reproduce the corresponding atomistic mean forces. These mean forces include not only a direct contribution from the corresponding interaction but also correlated contributions from the surrounding environment. The many-body correlations that influence this second contribution present significant challenges for accurately reproducing atomistic distribution functions. This work presents a detailed investigation of these many-body correlations and their significance for determining CG potentials while using liquid heptane as a model system. We employ a transparent geometric framework for directly determining CG potentials that has been previously developed within the context of the multiscale coarse-graining and generalized Yvon-Born-Green methods. In this framework, a metric tensor quantifies the relevant many-body correlations and precisely decomposes atomistic mean forces into contributions from specific interactions, which then determine the CG force field. Numerical investigations reveal that this metric tensor reflects both the CG representation and also subtle correlations between molecular geometry and intermolecular packing, but can be largely interpreted in terms of generic considerations. Our calculations demonstrate that contributions from correlated interactions can significantly impact the pair mean force and, thus, also the CG force field. Finally, an eigenvector analysis investigates the importance of these interactions for reproducing atomistic distribution functions.

摘要

粗粒化 (CG) 模型通常采用参数化的对势来再现原子模型确定的径向分布函数 (rdf)。这意味着 CG 模型必须再现相应的原子平均力。这些平均力不仅包括来自相应相互作用的直接贡献,还包括来自周围环境的相关贡献。影响这种第二贡献的多体相关性给准确再现原子分布函数带来了重大挑战。本工作详细研究了这些多体相关性及其在确定 CG 势能时的意义,同时以液体庚烷作为模型系统。我们采用了一个透明的几何框架来直接确定 CG 势能,该框架先前已在多尺度粗粒化和广义 Yvon-Born-Green 方法的背景下得到了发展。在这个框架中,一个度量张量量化了相关的多体相关性,并精确地将原子平均力分解为特定相互作用的贡献,然后确定 CG 力场。数值研究表明,这个度量张量反映了 CG 表示以及分子几何形状和分子间堆积之间的微妙相关性,但可以用一般的考虑来解释。我们的计算表明,相关相互作用的贡献会显著影响对平均力,从而也会影响 CG 力场。最后,特征向量分析研究了这些相互作用对再现原子分布函数的重要性。

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